Literature DB >> 28260487

Structure, Properties, and Biological Relevance of the DNA and RNA G-Quadruplexes: Overview 50 Years after Their Discovery.

N G Dolinnaya1, A M Ogloblina, M G Yakubovskaya.   

Abstract

G-quadruplexes (G4s), which are known to have important roles in regulation of key biological processes in both normal and pathological cells, are the most actively studied non-canonical structures of nucleic acids. In this review, we summarize the results of studies published in recent years that change significantly scientific views on various aspects of our understanding of quadruplexes. Modern notions on the polymorphism of DNA quadruplexes, on factors affecting thermodynamics and kinetics of G4 folding-unfolding, on structural organization of multiquadruplex systems, and on conformational features of RNA G4s and hybrid DNA-RNA G4s are discussed. Here we report the data on location of G4 sequence motifs in the genomes of eukaryotes, bacteria, and viruses, characterize G4-specific small-molecule ligands and proteins, as well as the mechanisms of their interactions with quadruplexes. New information on the structure and stability of G4s in telomeric DNA and oncogene promoters is discussed as well as proof being provided on the occurrence of G-quadruplexes in cells. Prominence is given to novel experimental techniques (single molecule manipulations, optical and magnetic tweezers, original chemical approaches, G4 detection in situ, in-cell NMR spectroscopy) that facilitate breakthroughs in the investigation of the structure and functions of G-quadruplexes.

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Year:  2016        PMID: 28260487      PMCID: PMC7087716          DOI: 10.1134/S0006297916130034

Source DB:  PubMed          Journal:  Biochemistry (Mosc)        ISSN: 0006-2979            Impact factor:   2.487


  24 in total

1.  Selective discrimination and classification of G-quadruplex structures with a host-guest sensing array.

Authors:  Junyi Chen; Briana L Hickey; Linlin Wang; Jiwon Lee; Adam D Gill; Alessia Favero; Roberta Pinalli; Enrico Dalcanale; Richard J Hooley; Wenwan Zhong
Journal:  Nat Chem       Date:  2021-04-01       Impact factor: 24.427

2.  Naphthalene Diimides Carrying Two β-Cyclodextrins Prefer Telomere RNA G-Quadruplex Recognition.

Authors:  Tingting Zou; Yuka Sato; Shuma Kaneyoshi; Kota Mano; Rui Yasukawa; Yoshifumi Nakano; Satoshi Fujii; Shinobu Sato; Shigeori Takenaka
Journal:  Molecules       Date:  2022-06-23       Impact factor: 4.927

3.  Alternatively spliced variants of the 5'-UTR of the ARPC2 mRNA regulate translation by an internal ribosome entry site (IRES) harboring a guanine-quadruplex motif.

Authors:  Munir A Al-Zeer; Mariola Dutkiewicz; Annekathrin von Hacht; Denise Kreuzmann; Viola Röhrs; Jens Kurreck
Journal:  RNA Biol       Date:  2019-08-14       Impact factor: 4.652

4.  Coexistence of two main folded G-quadruplexes within a single G-rich domain in the EGFR promoter.

Authors:  Maria L Greco; Anita Kotar; Riccardo Rigo; Camilla Cristofari; Janez Plavec; Claudia Sissi
Journal:  Nucleic Acids Res       Date:  2017-09-29       Impact factor: 16.971

5.  Structure and hydrodynamics of a DNA G-quadruplex with a cytosine bulge.

Authors:  Markus Meier; Aniel Moya-Torres; Natalie J Krahn; Matthew D McDougall; George L Orriss; Ewan K S McRae; Evan P Booy; Kevin McEleney; Trushar R Patel; Sean A McKenna; Jörg Stetefeld
Journal:  Nucleic Acids Res       Date:  2018-06-01       Impact factor: 16.971

6.  Selection and thermostability suggest G-quadruplexes are novel functional elements of the human genome.

Authors:  Wilfried M Guiblet; Michael DeGiorgio; Xiaoheng Cheng; Francesca Chiaromonte; Kristin A Eckert; Yi-Fei Huang; Kateryna D Makova
Journal:  Genome Res       Date:  2021-06-29       Impact factor: 9.043

7.  Myoblast Myogenic Differentiation but Not Fusion Process Is Inhibited via MyoD Tetraplex Interaction.

Authors:  Stefano Testa; Pietro D'Addabbo; Ersilia Fornetti; Roberta Belli; Claudia Fuoco; Sergio Bernardini; Stefano Cannata; Domenico Frezza; Cesare Gargioli
Journal:  Oxid Med Cell Longev       Date:  2018-05-07       Impact factor: 6.543

8.  Toward predictive R-loop computational biology: genome-scale prediction of R-loops reveals their association with complex promoter structures, G-quadruplexes and transcriptionally active enhancers.

Authors:  Vladimir A Kuznetsov; Vladyslav Bondarenko; Thidathip Wongsurawat; Surya P Yenamandra; Piroon Jenjaroenpun
Journal:  Nucleic Acids Res       Date:  2018-09-06       Impact factor: 16.971

Review 9.  DNA damage repair: historical perspectives, mechanistic pathways and clinical translation for targeted cancer therapy.

Authors:  Ruixue Huang; Ping-Kun Zhou
Journal:  Signal Transduct Target Ther       Date:  2021-07-09

10.  Towards Profiling of the G-Quadruplex Targeting Drugs in the Living Human Cells Using NMR Spectroscopy.

Authors:  Daniel Krafčík; Eva Ištvánková; Šimon Džatko; Pavlína Víšková; Silvie Foldynová-Trantírková; Lukáš Trantírek
Journal:  Int J Mol Sci       Date:  2021-06-03       Impact factor: 5.923

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