Literature DB >> 28259514

The Emperor's new clothes: Myths and truths of in-cell NMR.

Annalisa Pastore1, Piero Andrea Temussi2.   

Abstract

In-cell NMR is a technique developed to study the structure and dynamical behavior of biological macromolecules in their natural environment, circumventing all isolation and purification steps. In principle, the potentialities of the technique are enormous, not only for the possibility of bypassing all purification steps but, even more importantly, for the wealth of information that can be gained from directly monitoring interactions among biological macromolecules in a natural cell. Here, we review critically the promises, successes and limits of this technique as it stands now. Interestingly, many of the problems of NMR in bacterial cells stem from the artificially high concentration of the protein under study whose overexpression is anyway necessary to select it from the background. This has, as a consequence, that when overexpressed, most globular proteins, do not show an NMR spectrum, limiting the applicability of the technique to intrinsically unfolded or specifically behaving proteins. The outlook for in-cell NMR of eukaryotic cells is more promising and is possibly the most attracting aspect for the future.
Copyright © 2017 The Authors. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Cellular environment; Confinement; Molecular crowding; NMR

Mesh:

Substances:

Year:  2017        PMID: 28259514     DOI: 10.1016/j.abb.2017.02.008

Source DB:  PubMed          Journal:  Arch Biochem Biophys        ISSN: 0003-9861            Impact factor:   4.013


  12 in total

Review 1.  Whole-Cell Models and Simulations in Molecular Detail.

Authors:  Michael Feig; Yuji Sugita
Journal:  Annu Rev Cell Dev Biol       Date:  2019-07-12       Impact factor: 13.827

Review 2.  Biophysical Approaches for the Characterization of Protein-Metabolite Interactions.

Authors:  Anja Thalhammer; Nina K Bröker
Journal:  Methods Mol Biol       Date:  2023

3.  The anatomy of unfolding of Yfh1 is revealed by site-specific fold stability analysis measured by 2D NMR spectroscopy.

Authors:  Rita Puglisi; Gogulan Karunanithy; D Flemming Hansen; Annalisa Pastore; Piero Andrea Temussi
Journal:  Commun Chem       Date:  2021-09-06

4.  Intrinsically disordered chromatin protein NUPR1 binds to the C-terminal region of Polycomb RING1B.

Authors:  Patricia Santofimia-Castaño; Bruno Rizzuti; Ángel L Pey; Philippe Soubeyran; Miguel Vidal; Raúl Urrutia; Juan L Iovanna; José L Neira
Journal:  Proc Natl Acad Sci U S A       Date:  2017-07-18       Impact factor: 11.205

5.  Slow-Down in Diffusion in Crowded Protein Solutions Correlates with Transient Cluster Formation.

Authors:  Grzegorz Nawrocki; Po-Hung Wang; Isseki Yu; Yuji Sugita; Michael Feig
Journal:  J Phys Chem B       Date:  2017-11-30       Impact factor: 2.991

6.  Heat and cold denaturation of yeast frataxin: The effect of pressure.

Authors:  Rita Puglisi; Patrizia Cioni; Edi Gabellieri; Gianluca Presciuttini; Annalisa Pastore; Piero Andrea Temussi
Journal:  Biophys J       Date:  2022-03-09       Impact factor: 3.699

7.  Crowding in Cellular Environments at an Atomistic Level from Computer Simulations.

Authors:  Michael Feig; Isseki Yu; Po-Hung Wang; Grzegorz Nawrocki; Yuji Sugita
Journal:  J Phys Chem B       Date:  2017-07-12       Impact factor: 2.991

Review 8.  Solution NMR Spectroscopy in Target-Based Drug Discovery.

Authors:  Yan Li; Congbao Kang
Journal:  Molecules       Date:  2017-08-23       Impact factor: 4.411

9.  Quantifying the thermodynamics of protein unfolding using 2D NMR spectroscopy.

Authors:  Rita Puglisi; Oliver Brylski; Caterina Alfano; Stephen R Martin; Annalisa Pastore; Piero A Temussi
Journal:  Commun Chem       Date:  2020-08-07

10.  Crowding Effects on the Structure and Dynamics of the Intrinsically Disordered Nuclear Chromatin Protein NUPR1.

Authors:  Alessio Bonucci; Martina Palomino-Schätzlein; Paula Malo de Molina; Arantxa Arbe; Roberta Pierattelli; Bruno Rizzuti; Juan L Iovanna; José L Neira
Journal:  Front Mol Biosci       Date:  2021-07-05
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