Literature DB >> 28259084

Redesign of water networks for efficient biocatalysis.

Michael J Fink1, Per-Olof Syrén2.   

Abstract

Herein we highlight recent findings on the importance of water networks in proteins, and their redesign and reconfiguration as a new engineering strategy to generate enzymes with modulated binding affinity and improved catalytic versatility. Traditionally, enzyme engineering and drug design have focused on tailoring direct and favorable interactions between protein surfaces and ligands/transition states to achieve stronger binding, or an accelerated manufacturing of medicines, biofuels, fine chemicals and materials. In contrast, the opportunity to relocate water molecules in solvated binding pockets by protein design to improve overall energetics remains essentially unexplored, and fundamental understanding of the elusive processes involved is poor. Rewiring water networks in protein interiors impacts binding affinity, catalysis and the thermodynamic signature of biochemical processes through dynamic mechanisms, and thus has great potential to enhance binding specificity, accelerate catalysis and provide new reaction mechanisms and chemistry, that were not yet explored in nature.
Copyright © 2017 Elsevier Ltd. All rights reserved.

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Year:  2017        PMID: 28259084     DOI: 10.1016/j.cbpa.2017.02.013

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.972


  6 in total

1.  Filling the Void: Introducing Aromatic Interactions into Solvent Tunnels To Enhance Lipase Stability in Methanol.

Authors:  Shalev Gihaz; Margarita Kanteev; Yael Pazy; Ayelet Fishman
Journal:  Appl Environ Microbiol       Date:  2018-11-15       Impact factor: 4.792

2.  In Silico Studies of Small Molecule Interactions with Enzymes Reveal Aspects of Catalytic Function.

Authors:  Rajni Verma; Katie Mitchell-Koch
Journal:  Catalysts       Date:  2017-07-14       Impact factor: 4.146

3.  Exploring Solanum tuberosum Epoxide Hydrolase Internal Architecture by Water Molecules Tracking.

Authors:  Karolina Mitusińska; Tomasz Magdziarz; Maria Bzówka; Agnieszka Stańczak; Artur Gora
Journal:  Biomolecules       Date:  2018-11-12

4.  Deep Eutectic Solvents as New Reaction Media to Produce Alkyl-Glycosides Using Alpha-Amylase from Thermotoga maritima.

Authors:  Alfonso Miranda-Molina; Wendy Xolalpa; Simon Strompen; Rodrigo Arreola-Barroso; Leticia Olvera; Agustín López-Munguía; Edmundo Castillo; Gloria Saab-Rincon
Journal:  Int J Mol Sci       Date:  2019-10-31       Impact factor: 5.923

5.  Enzymatic synthesis of 2-phenethyl acetate in water catalyzed by an immobilized acyltransferase from Mycobacterium smegmatis.

Authors:  Huan Li; Feng Qin; Lijuan Huang; Wenjing Jia; Mingliang Zhang; Xin Li; Zhengyu Shu
Journal:  RSC Adv       Date:  2022-01-14       Impact factor: 3.361

6.  Switched reaction specificity in polyesterases towards amide bond hydrolysis by enzyme engineering.

Authors:  Antonino Biundo; Raditya Subagia; Michael Maurer; Doris Ribitsch; Per-Olof Syrén; Georg M Guebitz
Journal:  RSC Adv       Date:  2019-11-07       Impact factor: 4.036

  6 in total

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