| Literature DB >> 28257623 |
Jong-Hoon Kim1, Kenrad E Nelson2, Ursula Panzner3, Yogita Kasture3, Alain B Labrique2, Thomas F Wierzba4.
Abstract
Entities:
Year: 2017 PMID: 28257623 PMCID: PMC5335775 DOI: 10.1186/s12879-017-2274-3
Source DB: PubMed Journal: BMC Infect Dis ISSN: 1471-2334 Impact factor: 3.090
Genotype distribution from African HEVs
| Genotype | Country | Year of sampling | Sample | RNA region tested | Source |
|---|---|---|---|---|---|
| 1 | CARa | 2002 | One fecal sample from an outbreak | NAb | [34] |
| Chad | 1984 | A patient with hepatitis E | Complete genome | [28] | |
| 2004 | Five isolates from an outbreak | ORFc2 (363 ntd) | [35] | ||
| Egypt | 1993 | Acute hepatitis patients | ORF1 (location: 55-320) | [46] | |
| 2006-8 | Acute hepatitis patients | ORF1 | [62] | ||
| 2012e | Sixteen isolates from acute hepatitis patients | ORF2 (189 nt) | [124] | ||
| Namibia | 1983 | Nine isolates from an outbreak in Kavango | ORF2 (296 nt), 3 (188 nt) | [88] | |
| Sudan | 2004 | Twenty three isolates from an outbreak | ORF2 (363 nt) | [35] | |
| Uganda | 2007 | Internally displaced persons camp | NA | [123] | |
| 2008 | Twenty four isolates from an outbreak | NA | [119] | ||
| 2 | CAR | 2002 | Three fecal samples from an outbreak | NA | [34] |
| Chad | 2004 | Four isolates from an outbreak | ORF2 (363 nt) | [35] | |
| Namibia | 1995 | Four isolates from NANB outbreak in Rundu | ORF2 (451 nt near 3'-end) | [87] | |
| 3 | Nigeria | 2000e | Ten adult acute hepatitis patients | ORF1, 2 (3'-end) | [89] |
| Egypt | 2007 | One 9 year-old acute hepatitis patient | ORF1, 2, 2/3 | [48] | |
| Mayotte | 2009 | One French acute hepatitis patient (46 yr old) | ORF2 (288 nt) | [82] | |
| Madagascar | 2009 | Slaughter house workers | ORF2,3 (1000 nt) | [81] |
aCAR; Central African Republic
bNA; not available
cORF; open reading frame
dnt; nucleotides
ePublication year
Fig. 2Map of Africa. Colored areas represent countries where HEV is endemic at least for some subpopulations or sporadic HEV cases or outbreaks have been detected. Circles indicate HEV outbreaks with centers and areas indicating the location and outbreak size, respectively. Different colors represent different genotypes. White areas indicate countries where no data is available
Seroprevalence of anti-HEV antibodies in Africa. Seroprevalence varies by country and by subpopulation and studies were done under different conditions (e.g., sample size, demographics, and different diagnostic methods). Age of the sample is provided as mean (range or ± standard deviation, if available)
| Country | % sero-prevalence | Sample demographics | Sample size | Year of sampling | Diagnostic methods | Source |
|---|---|---|---|---|---|---|
| Burkina Faso | 19.1 | Blood donors | 178 | 2010-12 | IgG | [29] |
| 11.6 | Pregnant women | 189 | 2010-12 | IgG | [29] | |
| Burundi | 14.0 | Adults without chronic liver disease, 44.7 yrs old (±13.5) | 129 | 1986 | Total Ig | [30] |
| Cameroon | 14.2 | HIV-infected adults, 38.1 yrs old (±11.3)and | 289 | 2009-10 | IgG | [32] |
| 2.0 | HIV-infected children, 8.3 yrs old (±7.5) | 100 | 2009-10 | IgG | [32] | |
| CARa | 24.2 | Patients attending the center for sexually transmitted diseases | 157 | 1995b | Total Ig | [33] |
| Djibouti | 13.0 | Male peacekeepers in Haiti, 31.2 yrs old | 112 | 1998b | Total Ig | [42] |
| Egypt | 84.3 | Pregnant women, 24 yrs old (16-48) | 2,428 | 1997-2003 | Total Ig | [55] |
| 80.1 | Patients with chronic liver disease, 48 yrs old (23-62) | 518 | 2000-2 | IgG | [57] | |
| 67.6 | Residents of two rural villages, 24.5 and 26.5 yrs, respectively | 10,156 | 1997 | Total Ig | [54] | |
| 58.6 | Asymptomatic pregnant women, ~33 yrs old | 116 | 2009 | IgG | [58] | |
| 56.4 | Residents of a semi-urban village, 1-67 yrs old | 140 | 1993 | Total Ig | [51] | |
| 54.1 | Four waste water treatment plant male workers, 20-60 yrs old | 205 | 1998-9 | IgG | [116] | |
| 51.2 | Waste water treatment plant workers, 47.1 yrs old | 43 | 2011b | Total Ig | [60] | |
| 50.6 | Waste water treatment plant workers, 20-60 yrs old | 233 | 2000b | Total Ig | [61] | |
| 45.3 | Blood donors, 18-45 yrs old | 95 | 1998b | IgG | [52] | |
| 39.6 | Haemodialysis patients, 8-20 yrs old | 96 | 1998b | IgG | [52] | |
| 38.9 | Healthy females, 21.8 yrs old (16-25) | 95 | 1995 | IgG | [50] | |
| 17.2 | Residents of a hamlet, 20.9 yrs old (<1-95) | 1259 | 1992 | IgG | [49] | |
| 0.0 | Healthy controls, 20–60 yrs old | 96 | 1998-9 | IgG | [116] | |
| Gabon | 14.2 | Pregnant women, 24.6 yrs old (14-44) | 840 | 2005, 2007 | IgG | [73] |
| 0.0 | Villagers, 29 yrs old (2-80) | 35 | 1991-2 | Total Ig | [72] | |
| Ghana | 45.3 | Adult HIV patients, 40 yrs old (±9.6) | 402 | 2008-10 | IgG | [32] |
| 38.1 | Pig handlers, 36.5 yrs old (12-65) | 105 | 2009b | Total Ig | [77] | |
| 34.8 | Pig handlers, 32.9 yrs old (15-70) | 353 | 2008 | Total Ig | [75] | |
| 28.7 | Pregnant women, 28.9 yrs old (13-42) | 157 | 2008 | Total Ig | [78] | |
| 4.6 | Blood donors | 239 | 2012b | IgG | [76] | |
| 4.4 | 6-18 yr olds | 803 | 1993 | Total Ig | [74] | |
| Madagascar | 14.1 | Slaughterhouse workers | 427 | 2008-9 | Total Ig | [81] |
| Morocco | 8.5 | Blood donors | 200 | 2000-1 | IgG | [85] |
| 2.2 | men ( | 491 | 1995b | IgG | [84] | |
| Nigeria | 94.0 | Control healthy adults ( | 44 | 2008-9 | Total Ig | [90] |
| 43.0 | Health care workers | 88 | 2008-9 | Total Ig | [90] | |
| 13.4 | Healthy and sick people, 29.8 yrs old (3-72) | 186 | 2007 | Total Ig | [91] | |
| Sierra Leone | 7.6 | Primary school children, 6-12 yrs old | 66 | 1998b | IgG | [139] |
| South Africa | 10.7 | Urban ( | 767 | 1996b | Total Ig | [98,117] |
| 2.6 | Medical students | 227 | 1992 | Total Ig | [97] | |
| 1.8 | Canoeists who have been regularly exposed to waste water | 555 | 1992 | Total Ig | [97] | |
| Tanzania | 6.6 | Women, 32.1 yrs old (15-45) | 212 | 1996 | Total Ig | [114] |
| 0.2 | Healthy adults, 30.3 yrs old | 403 | 1992 | Total Ig | [112] | |
| 0.0 | Women | 180 | 1995 | Total Ig | [113] | |
| Tunisia | 46.0 | Healthy persons, > 60 yrs old | 100 | 1991 | IgG | [106] |
| 29.5 | Children with chronic haematological diseases | 34 | 1996 | IgG | [106] | |
| 28.9 | Polytransfused patients; adults ( | 107 | 2008-9 | IgG | [107] | |
| 22.0 | Healthy blood donors, < 40 yrs old | 100 | 1996 | IgG | [106] | |
| 12.1 | Pregnant women, 30.1 yrs old (17-52) | 404 | 2008-9 | IgG | [108] | |
| 10.0 | Healthy controls; blood donors ( | 160 | 2008-9 | IgG | [107] | |
| 5.4 | Blood donors, 32.6 yrs old (± 8.6) | 687 | 2007-8 | Total Ig | [109] | |
| 4.3 | Healthy persons, 20.7 yrs old (16-25) | 1,505 | 2008b | IgG | [110] | |
| Zambia | 40.6c | Urban adults, 18–64 yrs old | 106 | 1999 | IgG | [115] |
| 16.0 | Urban children, 1–15 yrs old | 194 | 2011 | IgG | [115] |
aCAR; Central African Republic
bThe year of the publication
cThe original study reports 42%, but the actual figures indicate that 43 out of 106 specimens are positive; 43/106 = 0.4056
Sporadic cases caused by hepatitis E virus in Africa. Proportion of sporadic hepatitis cases attributable to HEV varies by country and by subpopulation and studies were done under different conditions (e.g., sample size, demographics, and different diagnostic methods). Age of the sample is provided as mean (range or ± standard deviation, if available)
| Country | % sero-positivity | Case demographics | No. of cases | Year of sampling | Diagnostic methods | Source |
|---|---|---|---|---|---|---|
| Chad | 48.8 | Acute or fulminant hepatitis patients, 4-64 yrs old | 41 | 1993 | IgM | [36] |
| 20.0a | Sporadic cases | 17 | 1994 | RT-PCRb | [27] | |
| Djibouti | 58.5 | Acute hepatitis patients, 21.8 yrs old (2-65) | 65 | 1992-3 | IgM | [41] |
| Egypt | 24.2 | Jaundiced patients, 1-73 yrs old | 202 | 1993 | IgM | [46] |
| 22.2 | Jaundiced children, 5 yrs old (1-11) | 261 | 1990 | IgM | [70] | |
| 21.7 | Acute hepatitis patients, 26.6 yrs old (18-60) | 143 | 1993-4 | IgM | [71] | |
| 20.2 | Acute viral hepatitis patients, 8 yrs old | 287 | 2006-8 | IgM | [62] | |
| 17.9 | Acute hepatitis patients, 15.7 (± 14.9) yrs old | 235 | 2007-8 | IgM or > = 3-fold rise in IgG | [69] | |
| 17.2 | Children with elevated level (two-fold or more) of AST and ALT | 64 | 2006d | IgM | [47] | |
| 15.7 | Acute hepatitis patients, 15.9 yrs old (1-65) | 235 | 2007-8 | IgM | [63] | |
| 15.1 | Children with acute jaundice, 6.4 yrs old (1-13) | 73 | 1987-8 | IgM | [45] | |
| 12.5 | Patients with acute hepatitis, 20.2 yrs old (4-65) | 200 | 2001-2 | IgM | [64] | |
| 6.0 | Children with minor hepatic ailments, 6 mo-10 yrs | 100 | 2004-5 | IgM | [65] | |
| 5.0 | Patients with acute on chronic liver failure, 46.4 yrs old | 100 | 2009-10 | IgM | [66] | |
| 2.1 | Acute viral hepatitis patients, 25 yrs old (2-77) | 47 | 2002-5 | IgM | [76] | |
| 2.0 | Hepatitis patients, 5.4 yrs old (1.5-15) | 50 | 2007 | RT-PCR | [48] | |
| Ethiopia | 45.6 | Acute viral hepatitis patients with NANB | 79 | 1988-91 | FABAd | [43] |
| 31.8 | Non-pregnant women with acute viral hepatitis, 30 yrs old | 22 | 1988-91 | FABA | [6] | |
| 67.9 | Pregnant women with acute viral hepatitis, 26 yrs old | 28 | 1988-91 | FABA | [6] | |
| Mayotte | 100.0 | Patients with acute jaundice, 46 yrs old | 1 | 2009 | IgM | [82] |
| Nigeria | 70.0 | Male patients with acute hepatitis, 25-33 yrs old | 10 | 1997-8 | RT-PCR | [89] |
| Senegal | 20.0 | Patients with jaundice | 30 | 1992c | IgM | [93] |
| 10.2 | Patients with viral hepatitis | 49 | 1993c | IgM | [92] | |
| Somalia | 61.1 | Native Somalis and displaced Ethiopian patients with acute hepatitis, 7-90 yrs old | 36 | 1992-3 | IgM | [96] |
| Sudan | 5.4 | Patients with fulminant hepatic failure, 38 yrs old (19-75) | 37 | 2003-4 | IgM | [103] |
| 59.0 | Children with acute clinical jaundice, ≤14 yrs old | 39 | 1987-8 | IgM | [118] |
a20% was extrapolated from the results of RT-PCR of 5 samples out of total 17 cases
bReverse transcription polymerase chain reaction
cThe year of the publication
dFABA; fluorescent antibody blocking assay, which is claimed to detect acute infection, not but past infection