Literature DB >> 28256642

Identifying the optimal anticancer targets from the landscape of a cancer-immunity interaction network.

Chunhe Li1.   

Abstract

Cancer immunotherapy, an approach of targeting immune cells to attack tumor cells, has been suggested to be a promising way for cancer treatment recently. However, the successful application of this approach warrants a deeper understanding of the intricate interplay between cancer cells and the immune system. Especially, the mechanisms of immunotherapy remain elusive. In this work, we constructed a cancer-immunity interplay network by incorporating interactions among cancer cells and some representative immune cells, and uncovered the potential landscape of the cancer-immunity network. Three attractors emerge on the landscape, representing the cancer state, the immune state, and the hybrid state, which can correspond to escape, elimination, and equilibrium phases in the immunoediting theory, respectively. We quantified the transition processes between the cancer state and the immune state by calculating transition actions and identifying the corresponding minimum action paths (MAPs) between these two attractors. The transition actions, directly calculated from the high dimensional system, are correlated with the barrier heights from the landscape, but provide a more precise description of the dynamics of a system. By optimizing the transition actions from the cancer state to the immune state, we identified some optimal combinations of anticancer targets. Our combined approach of the landscape and optimization of transition actions offers a framework to study the stochastic dynamics and identify the optimal combination of targets for the cancer-immunity interplay, and can be applied to other cell communication networks or gene regulatory networks.

Entities:  

Mesh:

Year:  2017        PMID: 28256642     DOI: 10.1039/c6cp07767f

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  7 in total

1.  Landscape and kinetic path quantify critical transitions in epithelial-mesenchymal transition.

Authors:  Jintong Lang; Qing Nie; Chunhe Li
Journal:  Biophys J       Date:  2021-09-02       Impact factor: 3.699

2.  A landscape view on the interplay between EMT and cancer metastasis.

Authors:  Chunhe Li; Gabor Balazsi
Journal:  NPJ Syst Biol Appl       Date:  2018-08-23

3.  An enriched network motif family regulates multistep cell fate transitions with restricted reversibility.

Authors:  Yujie Ye; Xin Kang; Jordan Bailey; Chunhe Li; Tian Hong
Journal:  PLoS Comput Biol       Date:  2019-03-07       Impact factor: 4.475

4.  Minimal intervening control of biomolecular networks leading to a desired cellular state.

Authors:  Sang-Mok Choo; Sang-Min Park; Kwang-Hyun Cho
Journal:  Sci Rep       Date:  2019-09-11       Impact factor: 4.379

5.  Exposing the Underlying Relationship of Cancer Metastasis to Metabolism and Epithelial-Mesenchymal Transitions.

Authors:  Xin Kang; Jin Wang; Chunhe Li
Journal:  iScience       Date:  2019-10-31

6.  Landscape inferred from gene expression data governs pluripotency in embryonic stem cells.

Authors:  Xin Kang; Chunhe Li
Journal:  Comput Struct Biotechnol J       Date:  2020-02-15       Impact factor: 7.271

7.  Landscape reveals critical network structures for sharpening gene expression boundaries.

Authors:  Chunhe Li; Lei Zhang; Qing Nie
Journal:  BMC Syst Biol       Date:  2018-06-13
  7 in total

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