Literature DB >> 28251462

Genetic technologies for extremely thermophilic microorganisms of Sulfolobus, the only genetically tractable genus of crenarchaea.

Nan Peng1, Wenyuan Han2, Yingjun Li1,2, Yunxiang Liang1, Qunxin She3,4.   

Abstract

Archaea represents the third domain of life, with the information-processing machineries more closely resembling those of eukaryotes than the machineries of the bacterial counterparts but sharing metabolic pathways with organisms of Bacteria, the sister prokaryotic phylum. Archaeal organisms also possess unique features as revealed by genomics and genome comparisons and by biochemical characterization of prominent enzymes. Nevertheless, diverse genetic tools are required for in vivo experiments to verify these interesting discoveries. Considerable efforts have been devoted to the development of genetic tools for archaea ever since their discovery, and great progress has been made in the creation of archaeal genetic tools in the past decade. Versatile genetic toolboxes are now available for several archaeal models, among which Sulfolobus microorganisms are the only genus representing Crenarchaeota because all the remaining genera are from Euryarchaeota. Nevertheless, genetic tools developed for Sulfolobus are probably the most versatile among all archaeal models, and these include viral and plasmid shuttle vectors, conventional and novel genetic manipulation methods, CRISPR-based gene deletion and mutagenesis, and gene silencing, among which CRISPR tools have been reported only for Sulfolobus thus far. In this review, we summarize recent developments in all these useful genetic tools and discuss their possible application to research into archaeal biology by means of Sulfolobus models.

Entities:  

Keywords:  CRISPR-based gene editing; Sulfolobus; gene knockout; genetic manipulation; selection and counter-selection; shuttle vector

Mesh:

Substances:

Year:  2017        PMID: 28251462     DOI: 10.1007/s11427-016-0355-8

Source DB:  PubMed          Journal:  Sci China Life Sci        ISSN: 1674-7305            Impact factor:   6.038


  24 in total

1.  Cas4 Nucleases Can Effect Specific Integration of CRISPR Spacers.

Authors:  Zhufeng Zhang; Saifu Pan; Tao Liu; Yingjun Li; Nan Peng
Journal:  J Bacteriol       Date:  2019-05-22       Impact factor: 3.490

2.  Tolerance of Sulfolobus SMV1 virus to the immunity of I-A and III-B CRISPR-Cas systems in Sulfolobus islandicus.

Authors:  Tong Guo; Wenyuan Han; Qunxin She
Journal:  RNA Biol       Date:  2018-07-09       Impact factor: 4.652

3.  A Type III-B Cmr effector complex catalyzes the synthesis of cyclic oligoadenylate second messengers by cooperative substrate binding.

Authors:  Wenyuan Han; Stefano Stella; Yan Zhang; Tong Guo; Karolina Sulek; Li Peng-Lundgren; Guillermo Montoya; Qunxin She
Journal:  Nucleic Acids Res       Date:  2018-11-02       Impact factor: 16.971

4.  Cmr3 regulates the suppression on cyclic oligoadenylate synthesis by tag complementarity in a Type III-B CRISPR-Cas system.

Authors:  Tong Guo; Fan Zheng; Zhifeng Zeng; Yang Yang; Qi Li; Qunxin She; Wenyuan Han
Journal:  RNA Biol       Date:  2019-07-17       Impact factor: 4.652

5.  Microhomology-Mediated High-Throughput Gene Inactivation Strategy for the Hyperthermophilic Crenarchaeon Sulfolobus islandicus.

Authors:  Changyi Zhang; Rachel J Whitaker
Journal:  Appl Environ Microbiol       Date:  2017-12-15       Impact factor: 4.792

Review 6.  History of CRISPR-Cas from Encounter with a Mysterious Repeated Sequence to Genome Editing Technology.

Authors:  Yoshizumi Ishino; Mart Krupovic; Patrick Forterre
Journal:  J Bacteriol       Date:  2018-03-12       Impact factor: 3.490

7.  A Rapid Targeted Gene Inactivation Approach in Sulfolobus islandicus.

Authors:  Changyi Zhang; Serina M Taluja; Emily N Hallett; Rachel J Whitaker
Journal:  Methods Mol Biol       Date:  2022

8.  Archaeal extracellular vesicles are produced in an ESCRT-dependent manner and promote gene transfer and nutrient cycling in extreme environments.

Authors:  Junfeng Liu; Virginija Cvirkaite-Krupovic; Pierre-Henri Commere; Yunfeng Yang; Fan Zhou; Patrick Forterre; Yulong Shen; Mart Krupovic
Journal:  ISME J       Date:  2021-04-26       Impact factor: 11.217

9.  In vivo and in vitro protein imaging in thermophilic archaea by exploiting a novel protein tag.

Authors:  Valeria Visone; Wenyuan Han; Giuseppe Perugino; Giovanni Del Monaco; Qunxin She; Mosè Rossi; Anna Valenti; Maria Ciaramella
Journal:  PLoS One       Date:  2017-10-03       Impact factor: 3.240

10.  Cmr1 enables efficient RNA and DNA interference of a III-B CRISPR-Cas system by binding to target RNA and crRNA.

Authors:  Yingjun Li; Yan Zhang; Jinzhong Lin; Saifu Pan; Wenyuan Han; Nan Peng; Yun Xiang Liang; Qunxin She
Journal:  Nucleic Acids Res       Date:  2017-11-02       Impact factor: 16.971

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