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Literature DB >> 28249998

Whole-Genome Sequencing in Epidemiology of Campylobacter jejuni Infections.

Ann-Katrin Llarena¹, Eduardo Taboada², Mirko Rossi³.

Abstract

This review describes the current state of knowledge regarding the application of whole-genome sequencing (WGS) in the epidemiology of Campylobacter jejuni, the leading cause of bacterial gastroenteritis worldwide. We describe how WGS has increased our understanding of the evolutionary and epidemiological dynamics of this pathogen and how WGS has the potential to improve surveillance and outbreak detection. We have identified hurdles to the full implementation of WGS in public health settings. Despite these challenges, we think that ample evidence is available to support the benefits of integrating WGS into the routine monitoring of C. jejuni infections and outbreak investigations.

Entities: Disease Species

Keywords: foodborne pathogens; genome analysis; molecular subtyping; surveillance studies

Mesh：

Year: 2017 PMID： 28249998 PMCID： PMC5405246 DOI： 10.1128/JCM.00017-17

Source DB: PubMed Journal: J Clin Microbiol ISSN： 0095-1137 Impact factor: 5.948

30 in total

1. Calling all Campy--how routine investigation and molecular characterization impacts the understanding of campylobacteriosis epidemiology--Alaska, United States, 2004-2013.

Authors: L J Castrodale; G M Provo; C M Xavier; J B McLaughlin
Journal: Epidemiol Infect Date: 2015-06-29 Impact factor: 2.451

Review 2. Global Epidemiology of Campylobacter Infection.

Authors: Nadeem O Kaakoush; Natalia Castaño-Rodríguez; Hazel M Mitchell; Si Ming Man
Journal: Clin Microbiol Rev Date: 2015-07 Impact factor: 26.132

3. Point mutations in the major outer membrane protein drive hypervirulence of a rapidly expanding clone of Campylobacter jejuni.

Authors: Zuowei Wu; Balamurugan Periaswamy; Orhan Sahin; Michael Yaeger; Paul Plummer; Weiwei Zhai; Zhangqi Shen; Lei Dai; Swaine L Chen; Qijing Zhang
Journal: Proc Natl Acad Sci U S A Date: 2016-09-06 Impact factor: 11.205

4. Passage of Campylobacter jejuni through the chicken reservoir or mice promotes phase variation in contingency genes Cj0045 and Cj0170 that strongly associates with colonization and disease in a mouse model.

Authors: Joo-Sung Kim; Katherine A Artymovich; David F Hall; Eric J Smith; Richard Fulton; Julia Bell; Leslie Dybas; Linda S Mansfield; Robert Tempelman; David L Wilson; John E Linz
Journal: Microbiology Date: 2012-02-16 Impact factor: 2.777

5. Multilocus sequence typing (MLST) and whole-genome MLST of Campylobacter jejuni isolates from human infections in three districts during a seasonal peak in Finland.

Authors: Sara M Kovanen; Rauni I Kivistö; Mirko Rossi; Thomas Schott; Ulla-Maija Kärkkäinen; Tamara Tuuminen; Jaakko Uksila; Hilpi Rautelin; Marja-Liisa Hänninen
Journal: J Clin Microbiol Date: 2014-09-17 Impact factor: 5.948

6. Real-time genomic epidemiological evaluation of human Campylobacter isolates by use of whole-genome multilocus sequence typing.

Authors: Alison J Cody; Noel D McCarthy; Melissa Jansen van Rensburg; Tomide Isinkaye; Stephen D Bentley; Julian Parkhill; Kate E Dingle; Ian C J W Bowler; Keith A Jolley; Martin C J Maiden
Journal: J Clin Microbiol Date: 2013-05-22 Impact factor: 5.948

7. Prospective use of whole genome sequencing (WGS) detected a multi-country outbreak of Salmonella Enteritidis.

Authors: T Inns; P M Ashton; S Herrera-Leon; J Lighthill; S Foulkes; T Jombart; Y Rehman; A Fox; T Dallman; E DE Pinna; L Browning; J E Coia; O Edeghere; R Vivancos
Journal: Epidemiol Infect Date: 2016-10-26 Impact factor: 4.434

8. BIGSdb: Scalable analysis of bacterial genome variation at the population level.

Authors: Keith A Jolley; Martin C J Maiden
Journal: BMC Bioinformatics Date: 2010-12-10 Impact factor: 3.169

9. Partial Failure of Milk Pasteurization as a Risk for the Transmission of Campylobacter From Cattle to Humans.

Authors: Anand M Fernandes; Sooria Balasegaram; Caroline Willis; Helen M L Wimalarathna; Martin C Maiden; Noel D McCarthy
Journal: Clin Infect Dis Date: 2015-06-10 Impact factor: 9.079

10. Comparative variation within the genome of Campylobacter jejuni NCTC 11168 in human and murine hosts.

Authors: Dallas K Thomas; Abdul G Lone; L Brent Selinger; Eduardo N Taboada; Richard R E Uwiera; D Wade Abbott; G Douglas Inglis
Journal: PLoS One Date: 2014-02-07 Impact factor: 3.240

21 in total

1. Genomic Epidemiology Links Burkholderia pseudomallei from Individual Human Cases to B. pseudomallei from Targeted Environmental Sampling in Northern Australia.

Authors: Jessica R Webb; Mark Mayo; Audrey Rachlin; Celeste Woerle; Ella Meumann; Vanessa Rigas; Glenda Harrington; Mirjam Kaestli; Bart J Currie
Journal: J Clin Microbiol Date: 2022-01-26 Impact factor: 11.677

2. Antimicrobial Resistance in Campylobacter coli and Campylobacter jejuni from Human Campylobacteriosis in Taiwan, 2016 to 2019.

Authors: Ying-Shu Liao; Bo-Han Chen; Ru-Hsiou Teng; You-Wun Wang; Jui-Hsien Chang; Shiu-Yun Liang; Chi-Sen Tsao; Yu-Ping Hong; Hui-Yung Sung; Chien-Shun Chiou
Journal: Antimicrob Agents Chemother Date: 2021-11-08 Impact factor: 5.938

Review 3. Population Biology and Comparative Genomics of Campylobacter Species.

Authors: Lennard Epping; Esther-Maria Antão; Torsten Semmler
Journal: Curr Top Microbiol Immunol Date: 2021 Impact factor: 4.291

4. Genome Reduction for Niche Association in Campylobacter Hepaticus, A Cause of Spotty Liver Disease in Poultry.

Authors: Liljana Petrovska; Yue Tang; Melissa J Jansen van Rensburg; Shaun Cawthraw; Javier Nunez; Samuel K Sheppard; Richard J Ellis; Adrian M Whatmore; Tim R Crawshaw; Richard M Irvine
Journal: Front Cell Infect Microbiol Date: 2017-08-11 Impact factor: 5.293

5. Draft Genome Sequence of Campylobacter jejuni CAM970 and C. coli CAM962, Associated with a Large Outbreak of Foodborne Illness in Fukuoka, Japan, in 2016.

Authors: Hiroshi Asakura; Naoto Takahashi; Shiori Yamamoto; Hiroyuki Maruyama
Journal: Genome Announc Date: 2017-06-15