Literature DB >> 28248490

Through the Lipopolysaccharide Glass: A Potent Antimicrobial Peptide Induces Phase Changes in Membranes.

Damien Jefferies1, Pin-Chia Hsu1, Syma Khalid1.   

Abstract

In the following, molecular simulations are used to reveal unexpected behavior within bacterial membranes. We show that lipopolysaccharide molecules found in these membranes form viscous amorphous solids when they are interlinked with monovalent and divalent cations. The bilayers exhibit both liquid and glassy characteristics, due to the coexistence of both liquid and crystalline domains in the bilayer. Polymyxin B1, a potent antimicrobial peptide, is shown to increase order within the lipopolysaccharide bilayers by inducing the formation of crystalline patches. Crucially we are able to decompose the energetics of insertion into their enthalpic and entropic components. The present coarse-grain molecular dynamics study provides unprecedented insights into the antibacterial action of antimicrobial peptides, thus paving the way for development of novel therapeutic agents to treat multiple drug resistant Gram-negative bacteria.

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Year:  2017        PMID: 28248490     DOI: 10.1021/acs.biochem.6b01063

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  13 in total

1.  CHARMM-GUI Martini Maker for modeling and simulation of complex bacterial membranes with lipopolysaccharides.

Authors:  Pin-Chia Hsu; Bart M H Bruininks; Damien Jefferies; Paulo Cesar Telles de Souza; Jumin Lee; Dhilon S Patel; Siewert J Marrink; Yifei Qi; Syma Khalid; Wonpil Im
Journal:  J Comput Chem       Date:  2017-08-03       Impact factor: 3.376

2.  Characterization of Lipid-Protein Interactions and Lipid-Mediated Modulation of Membrane Protein Function through Molecular Simulation.

Authors:  Melanie P Muller; Tao Jiang; Chang Sun; Muyun Lihan; Shashank Pant; Paween Mahinthichaichan; Anda Trifan; Emad Tajkhorshid
Journal:  Chem Rev       Date:  2019-04-12       Impact factor: 60.622

3.  Atomistic Scale Effects of Lipopolysaccharide Modifications on Bacterial Outer Membrane Defenses.

Authors:  Amy Rice; Jeff Wereszczynski
Journal:  Biophys J       Date:  2018-03-27       Impact factor: 4.033

4.  Salmonella Membrane Structural Remodeling Increases Resistance to Antimicrobial Peptide LL-37.

Authors:  Michael W Martynowycz; Amy Rice; Konstantin Andreev; Thatyane M Nobre; Ivan Kuzmenko; Jeff Wereszczynski; David Gidalevitz
Journal:  ACS Infect Dis       Date:  2019-05-24       Impact factor: 5.084

5.  Polymyxin B Loosens Lipopolysaccharide Bilayer but Stiffens Phospholipid Bilayer.

Authors:  Lei Fu; Mingwei Wan; Shan Zhang; Lianghui Gao; Weihai Fang
Journal:  Biophys J       Date:  2019-11-16       Impact factor: 4.033

6.  Polymyxins induce lipid scrambling and disrupt the homeostasis of Gram-negative bacteria membrane.

Authors:  Lei Fu; Xiangyuan Li; Shan Zhang; Yi Dong; Weihai Fang; Lianghui Gao
Journal:  Biophys J       Date:  2022-08-13       Impact factor: 3.699

7.  Molecular dynamics simulations informed by membrane lipidomics reveal the structure-interaction relationship of polymyxins with the lipid A-based outer membrane of Acinetobacter baumannii.

Authors:  Xukai Jiang; Kai Yang; Bing Yuan; Meiling Han; Yan Zhu; Kade D Roberts; Nitin A Patil; Jingliang Li; Bin Gong; Robert E W Hancock; Tony Velkov; Falk Schreiber; Lushan Wang; Jian Li
Journal:  J Antimicrob Chemother       Date:  2020-12-01       Impact factor: 5.790

8.  Simulations of octapeptin-outer membrane interactions reveal conformational flexibility is linked to antimicrobial potency.

Authors:  Xukai Jiang; Kai Yang; Bing Yuan; Bin Gong; Lin Wan; Nitin A Patil; James D Swarbrick; Kade D Roberts; Falk Schreiber; Lushan Wang; Tony Velkov; Jian Li
Journal:  J Biol Chem       Date:  2020-09-10       Impact factor: 5.157

9.  Outer Membranes of Polymyxin-Resistant Acinetobacter baumannii with Phosphoethanolamine-Modified Lipid A and Lipopolysaccharide Loss Display Different Atomic-Scale Interactions with Polymyxins.

Authors:  Xukai Jiang; Kai Yang; Mei-Ling Han; Bing Yuan; Jingliang Li; Bin Gong; Tony Velkov; Falk Schreiber; Lushan Wang; Jian Li
Journal:  ACS Infect Dis       Date:  2020-09-15       Impact factor: 5.084

Review 10.  Microscopic view of lipids and their diverse biological functions.

Authors:  Po-Chao Wen; Paween Mahinthichaichan; Noah Trebesch; Tao Jiang; Zhiyu Zhao; Eric Shinn; Yuhang Wang; Mrinal Shekhar; Karan Kapoor; Chun Kit Chan; Emad Tajkhorshid
Journal:  Curr Opin Struct Biol       Date:  2018-07-23       Impact factor: 6.809

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