Literature DB >> 28247184

Bayesian Methods for Calibrating Health Policy Models: A Tutorial.

Nicolas A Menzies1,2, Djøra I Soeteman3, Ankur Pandya3,4, Jane J Kim3,4.   

Abstract

Mathematical simulation models are commonly used to inform health policy decisions. These health policy models represent the social and biological mechanisms that determine health and economic outcomes, combine multiple sources of evidence about how policy alternatives will impact those outcomes, and synthesize outcomes into summary measures salient for the policy decision. Calibrating these health policy models to fit empirical data can provide face validity and improve the quality of model predictions. Bayesian methods provide powerful tools for model calibration. These methods summarize information relevant to a particular policy decision into (1) prior distributions for model parameters, (2) structural assumptions of the model, and (3) a likelihood function created from the calibration data, combining these different sources of evidence via Bayes' theorem. This article provides a tutorial on Bayesian approaches for model calibration, describing the theoretical basis for Bayesian calibration approaches as well as pragmatic considerations that arise in the tasks of creating calibration targets, estimating the posterior distribution, and obtaining results to inform the policy decision. These considerations, as well as the specific steps for implementing the calibration, are described in the context of an extended worked example about the policy choice to provide (or not provide) treatment for a hypothetical infectious disease. Given the many simplifications and subjective decisions required to create prior distributions, model structure, and likelihood, calibration should be considered an exercise in creating a reasonable model that produces valid evidence for policy, rather than as a technique for identifying a unique theoretically optimal summary of the evidence.

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Year:  2017        PMID: 28247184      PMCID: PMC5448142          DOI: 10.1007/s40273-017-0494-4

Source DB:  PubMed          Journal:  Pharmacoeconomics        ISSN: 1170-7690            Impact factor:   4.981


  26 in total

Review 1.  Bayesian methods in meta-analysis and evidence synthesis.

Authors:  A J Sutton; K R Abrams
Journal:  Stat Methods Med Res       Date:  2001-08       Impact factor: 3.021

2.  Approximate Bayesian computation in population genetics.

Authors:  Mark A Beaumont; Wenyang Zhang; David J Balding
Journal:  Genetics       Date:  2002-12       Impact factor: 4.562

Review 3.  Improving projections at the country level: the UNAIDS Estimation and Projection Package 2005.

Authors:  T Brown; N C Grassly; G Garnett; K Stanecki
Journal:  Sex Transm Infect       Date:  2006-06       Impact factor: 3.519

Review 4.  Calibration methods used in cancer simulation models and suggested reporting guidelines.

Authors:  Natasha K Stout; Amy B Knudsen; Chung Yin Kong; Pamela M McMahon; G Scott Gazelle
Journal:  Pharmacoeconomics       Date:  2009       Impact factor: 4.981

Review 5.  Recommendations of the Panel on Cost-effectiveness in Health and Medicine.

Authors:  M C Weinstein; J E Siegel; M R Gold; M S Kamlet; L B Russell
Journal:  JAMA       Date:  1996-10-16       Impact factor: 56.272

Review 6.  Philosophy and the practice of Bayesian statistics.

Authors:  Andrew Gelman; Cosma Rohilla Shalizi
Journal:  Br J Math Stat Psychol       Date:  2012-02-24       Impact factor: 3.380

7.  Using Active Learning for Speeding up Calibration in Simulation Models.

Authors:  Mucahit Cevik; Mehmet Ali Ergun; Natasha K Stout; Amy Trentham-Dietz; Mark Craven; Oguzhan Alagoz
Journal:  Med Decis Making       Date:  2015-10-15       Impact factor: 2.583

8.  Probabilistic uncertainty analysis of epidemiological modeling to guide public health intervention policy.

Authors:  Jennifer A Gilbert; Lauren Ancel Meyers; Alison P Galvani; Jeffrey P Townsend
Journal:  Epidemics       Date:  2013-11-19       Impact factor: 4.396

9.  Cost-effectiveness acceptability curves--facts, fallacies and frequently asked questions.

Authors:  Elisabeth Fenwick; Bernie J O'Brien; Andrew Briggs
Journal:  Health Econ       Date:  2004-05       Impact factor: 3.046

10.  Multiparameter evidence synthesis in epidemiology and medical decision-making.

Authors:  A E Ades; Nicky J Welton; Deborah Caldwell; Malcolm Price; Aicha Goubar; Guobing Lu
Journal:  J Health Serv Res Policy       Date:  2008-10
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  17 in total

1.  Revisiting assumptions about age-based mixing representations in mathematical models of sexually transmitted infections.

Authors:  C W Easterly; F Alarid-Escudero; E A Enns; S Kulasingam
Journal:  Vaccine       Date:  2018-08-06       Impact factor: 3.641

2.  Cost-effectiveness of post-treatment follow-up examinations and secondary prevention of tuberculosis in a high-incidence setting: a model-based analysis.

Authors:  Florian M Marx; Ted Cohen; Nicolas A Menzies; Joshua A Salomon; Grant Theron; Reza Yaesoubi
Journal:  Lancet Glob Health       Date:  2020-09       Impact factor: 26.763

3.  CDX2 Biomarker Testing and Adjuvant Therapy for Stage II Colon Cancer: An Exploratory Cost-Effectiveness Analysis.

Authors:  Fernando Alarid-Escudero; Deborah Schrag; Karen M Kuntz
Journal:  Value Health       Date:  2021-11-02       Impact factor: 5.725

4.  Calibrating Natural History of Cancer Models in the Presence of Data Incompatibility: Problems and Solutions.

Authors:  Olena Mandrik; Chloe Thomas; Sophie Whyte; James Chilcott
Journal:  Pharmacoeconomics       Date:  2022-01-07       Impact factor: 4.558

5.  Microsimulation Model Calibration with Approximate Bayesian Computation in R: A Tutorial.

Authors:  Peter Shewmaker; Stavroula A Chrysanthopoulou; Rowan Iskandar; Derek Lake; Earic Jutkowitz
Journal:  Med Decis Making       Date:  2022-03-21       Impact factor: 2.749

6.  CaliPro: A Calibration Protocol That Utilizes Parameter Density Estimation to Explore Parameter Space and Calibrate Complex Biological Models.

Authors:  Louis R Joslyn; Denise E Kirschner; Jennifer J Linderman
Journal:  Cell Mol Bioeng       Date:  2020-09-15       Impact factor: 2.321

7.  To Sobol or not to Sobol? The effects of sampling schemes in systems biology applications.

Authors:  Marissa Renardy; Louis R Joslyn; Jess A Millar; Denise E Kirschner
Journal:  Math Biosci       Date:  2021-04-16       Impact factor: 3.935

8.  A computational model tracks whole-lung Mycobacterium tuberculosis infection and predicts factors that inhibit dissemination.

Authors:  Timothy Wessler; Louis R Joslyn; H Jacob Borish; Hannah P Gideon; JoAnne L Flynn; Denise E Kirschner; Jennifer J Linderman
Journal:  PLoS Comput Biol       Date:  2020-05-20       Impact factor: 4.475

9.  Tuberculosis control interventions targeted to previously treated people in a high-incidence setting: a modelling study.

Authors:  Florian M Marx; Reza Yaesoubi; Nicolas A Menzies; Joshua A Salomon; Alyssa Bilinski; Nulda Beyers; Ted Cohen
Journal:  Lancet Glob Health       Date:  2018-02-19       Impact factor: 26.763

10.  Adaptive guidelines for the treatment of gonorrhea to increase the effective life span of antibiotics among men who have sex with men in the United States: A mathematical modeling study.

Authors:  Reza Yaesoubi; Ted Cohen; Katherine Hsu; Thomas L Gift; Harrell Chesson; Joshua A Salomon; Yonatan H Grad
Journal:  PLoS Med       Date:  2020-04-03       Impact factor: 11.069

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