Literature DB >> 28245910

Genomics of Islet (Dys)function and Type 2 Diabetes.

Nathan Lawlor1, Shubham Khetan2, Duygu Ucar3, Michael L Stitzel4.   

Abstract

Pancreatic islet dysfunction and beta cell failure are hallmarks of type 2 diabetes mellitus (T2DM) pathogenesis. In this review, we discuss how genome-wide association studies (GWASs) and recent developments in islet (epi)genome and transcriptome profiling (particularly single cell analyses) are providing novel insights into the genetic, environmental, and cellular contributions to islet (dys)function and T2DM pathogenesis. Moving forward, study designs that interrogate and model genetic variation [e.g., allelic profiling and (epi)genome editing] will be critical to dissect the molecular genetics of T2DM pathogenesis, to build next-generation cellular and animal models, and to develop precision medicine approaches to detect, treat, and prevent islet (dys)function and T2DM.
Copyright © 2017 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Type 2 diabetes (T2D); epigenomics; genomics; pancreatic islets; single cell; transcriptomics

Mesh:

Year:  2017        PMID: 28245910      PMCID: PMC5458785          DOI: 10.1016/j.tig.2017.01.010

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  100 in total

1.  The investigation of the oxidative stress-related parameters in type 2 diabetes mellitus.

Authors:  Ouassila Aouacheri; Saad Saka; Meriem Krim; Amira Messaadia; Imen Maidi
Journal:  Can J Diabetes       Date:  2014-07-22       Impact factor: 4.190

2.  Super-enhancers in the control of cell identity and disease.

Authors:  Denes Hnisz; Brian J Abraham; Tong Ihn Lee; Ashley Lau; Violaine Saint-André; Alla A Sigova; Heather A Hoke; Richard A Young
Journal:  Cell       Date:  2013-10-10       Impact factor: 41.582

3.  Pancreatic β cell dedifferentiation as a mechanism of diabetic β cell failure.

Authors:  Chutima Talchai; Shouhong Xuan; Hua V Lin; Lori Sussel; Domenico Accili
Journal:  Cell       Date:  2012-09-14       Impact factor: 41.582

4.  Genome-wide association analysis identifies loci for type 2 diabetes and triglyceride levels.

Authors:  Richa Saxena; Benjamin F Voight; Valeriya Lyssenko; Noël P Burtt; Paul I W de Bakker; Hong Chen; Jeffrey J Roix; Sekar Kathiresan; Joel N Hirschhorn; Mark J Daly; Thomas E Hughes; Leif Groop; David Altshuler; Peter Almgren; Jose C Florez; Joanne Meyer; Kristin Ardlie; Kristina Bengtsson Boström; Bo Isomaa; Guillaume Lettre; Ulf Lindblad; Helen N Lyon; Olle Melander; Christopher Newton-Cheh; Peter Nilsson; Marju Orho-Melander; Lennart Råstam; Elizabeth K Speliotes; Marja-Riitta Taskinen; Tiinamaija Tuomi; Candace Guiducci; Anna Berglund; Joyce Carlson; Lauren Gianniny; Rachel Hackett; Liselotte Hall; Johan Holmkvist; Esa Laurila; Marketa Sjögren; Maria Sterner; Aarti Surti; Margareta Svensson; Malin Svensson; Ryan Tewhey; Brendan Blumenstiel; Melissa Parkin; Matthew Defelice; Rachel Barry; Wendy Brodeur; Jody Camarata; Nancy Chia; Mary Fava; John Gibbons; Bob Handsaker; Claire Healy; Kieu Nguyen; Casey Gates; Carrie Sougnez; Diane Gage; Marcia Nizzari; Stacey B Gabriel; Gung-Wei Chirn; Qicheng Ma; Hemang Parikh; Delwood Richardson; Darrell Ricke; Shaun Purcell
Journal:  Science       Date:  2007-04-26       Impact factor: 47.728

5.  The pancreatic β cell and type 1 diabetes: innocent bystander or active participant?

Authors:  Scott A Soleimanpour; Doris A Stoffers
Journal:  Trends Endocrinol Metab       Date:  2013-05-03       Impact factor: 12.015

6.  Human islets contain four distinct subtypes of β cells.

Authors:  Craig Dorrell; Jonathan Schug; Pamela S Canaday; Holger A Russ; Branden D Tarlow; Maria T Grompe; Tamara Horton; Matthias Hebrok; Philip R Streeter; Klaus H Kaestner; Markus Grompe
Journal:  Nat Commun       Date:  2016-07-11       Impact factor: 14.919

7.  Integrative analysis of 111 reference human epigenomes.

Authors:  Anshul Kundaje; Wouter Meuleman; Jason Ernst; Misha Bilenky; Angela Yen; Alireza Heravi-Moussavi; Pouya Kheradpour; Zhizhuo Zhang; Jianrong Wang; Michael J Ziller; Viren Amin; John W Whitaker; Matthew D Schultz; Lucas D Ward; Abhishek Sarkar; Gerald Quon; Richard S Sandstrom; Matthew L Eaton; Yi-Chieh Wu; Andreas R Pfenning; Xinchen Wang; Melina Claussnitzer; Yaping Liu; Cristian Coarfa; R Alan Harris; Noam Shoresh; Charles B Epstein; Elizabeta Gjoneska; Danny Leung; Wei Xie; R David Hawkins; Ryan Lister; Chibo Hong; Philippe Gascard; Andrew J Mungall; Richard Moore; Eric Chuah; Angela Tam; Theresa K Canfield; R Scott Hansen; Rajinder Kaul; Peter J Sabo; Mukul S Bansal; Annaick Carles; Jesse R Dixon; Kai-How Farh; Soheil Feizi; Rosa Karlic; Ah-Ram Kim; Ashwinikumar Kulkarni; Daofeng Li; Rebecca Lowdon; GiNell Elliott; Tim R Mercer; Shane J Neph; Vitor Onuchic; Paz Polak; Nisha Rajagopal; Pradipta Ray; Richard C Sallari; Kyle T Siebenthall; Nicholas A Sinnott-Armstrong; Michael Stevens; Robert E Thurman; Jie Wu; Bo Zhang; Xin Zhou; Arthur E Beaudet; Laurie A Boyer; Philip L De Jager; Peggy J Farnham; Susan J Fisher; David Haussler; Steven J M Jones; Wei Li; Marco A Marra; Michael T McManus; Shamil Sunyaev; James A Thomson; Thea D Tlsty; Li-Huei Tsai; Wei Wang; Robert A Waterland; Michael Q Zhang; Lisa H Chadwick; Bradley E Bernstein; Joseph F Costello; Joseph R Ecker; Martin Hirst; Alexander Meissner; Aleksandar Milosavljevic; Bing Ren; John A Stamatoyannopoulos; Ting Wang; Manolis Kellis
Journal:  Nature       Date:  2015-02-19       Impact factor: 69.504

Review 8.  β-cell failure in type 2 diabetes: postulated mechanisms and prospects for prevention and treatment.

Authors:  Philippe A Halban; Kenneth S Polonsky; Donald W Bowden; Meredith A Hawkins; Charlotte Ling; Kieren J Mather; Alvin C Powers; Christopher J Rhodes; Lori Sussel; Gordon C Weir
Journal:  Diabetes Care       Date:  2014-05-08       Impact factor: 19.112

9.  Single-Cell Transcriptome Profiling of Human Pancreatic Islets in Health and Type 2 Diabetes.

Authors:  Åsa Segerstolpe; Athanasia Palasantza; Pernilla Eliasson; Eva-Marie Andersson; Anne-Christine Andréasson; Xiaoyan Sun; Simone Picelli; Alan Sabirsh; Maryam Clausen; Magnus K Bjursell; David M Smith; Maria Kasper; Carina Ämmälä; Rickard Sandberg
Journal:  Cell Metab       Date:  2016-09-22       Impact factor: 27.287

10.  De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data.

Authors:  Dominic Grün; Mauro J Muraro; Jean-Charles Boisset; Kay Wiebrands; Anna Lyubimova; Gitanjali Dharmadhikari; Maaike van den Born; Johan van Es; Erik Jansen; Hans Clevers; Eelco J P de Koning; Alexander van Oudenaarden
Journal:  Cell Stem Cell       Date:  2016-06-23       Impact factor: 24.633

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  36 in total

1.  Arsenic-gene interactions and beta-cell function in the Strong Heart Family Study.

Authors:  Poojitha Balakrishnan; Ana Navas-Acien; Karin Haack; Dhananjay Vaidya; Jason G Umans; Lyle G Best; Walter Goessler; Kevin A Francesconi; Nora Franceschini; Kari E North; Shelley A Cole; V Saroja Voruganti; Matthew O Gribble
Journal:  Toxicol Appl Pharmacol       Date:  2018-04-03       Impact factor: 4.219

2.  A Common Type 2 Diabetes Risk Variant Potentiates Activity of an Evolutionarily Conserved Islet Stretch Enhancer and Increases C2CD4A and C2CD4B Expression.

Authors:  Ina Kycia; Brooke N Wolford; Jeroen R Huyghe; Christian Fuchsberger; Swarooparani Vadlamudi; Romy Kursawe; Ryan P Welch; Ricardo d'Oliveira Albanus; Asli Uyar; Shubham Khetan; Nathan Lawlor; Mohan Bolisetty; Anubhuti Mathur; Johanna Kuusisto; Markku Laakso; Duygu Ucar; Karen L Mohlke; Michael Boehnke; Francis S Collins; Stephen C J Parker; Michael L Stitzel
Journal:  Am J Hum Genet       Date:  2018-04-05       Impact factor: 11.025

Review 3.  Novel approaches to restore beta cell function in prediabetes and type 2 diabetes.

Authors:  Vishal A Salunkhe; Rajakrishnan Veluthakal; Steven E Kahn; Debbie C Thurmond
Journal:  Diabetologia       Date:  2018-06-08       Impact factor: 10.122

4.  Prenatal exposure to diesel exhaust PM2.5 causes offspring β cell dysfunction in adulthood.

Authors:  Minjie Chen; Shuai Liang; Xiaobo Qin; Li Zhang; Lianglin Qiu; Sufang Chen; Ziying Hu; Yanyi Xu; Wanjun Wang; Yuhao Zhang; Qi Cao; Zhekang Ying
Journal:  Am J Physiol Endocrinol Metab       Date:  2017-12-26       Impact factor: 4.310

5.  ATP synthase β-subunit abnormality in pancreas islets of rats with polycystic ovary syndrome and type 2 diabetes mellitus.

Authors:  Wei Li; Sai-Jiao Li; Tai-Lang Yin; Jing Yang; Yan Cheng
Journal:  J Huazhong Univ Sci Technolog Med Sci       Date:  2017-04-11

Review 6.  Misfolded proinsulin in the endoplasmic reticulum during development of beta cell failure in diabetes.

Authors:  Anoop Arunagiri; Leena Haataja; Corey N Cunningham; Neha Shrestha; Billy Tsai; Ling Qi; Ming Liu; Peter Arvan
Journal:  Ann N Y Acad Sci       Date:  2018-01-28       Impact factor: 5.691

7.  Association of ABCG1 gene methylation and its dynamic change status with incident type 2 diabetes mellitus: the Rural Chinese Cohort Study.

Authors:  Ranran Qie; Qing Chen; Tieqiang Wang; Xiaoliang Chen; Jian Wang; Ruirong Cheng; Jinchun Lin; Yang Zhao; Dechen Liu; Pei Qin; Cheng Cheng; Leilei Liu; Quanman Li; Chunmei Guo; Qionggui Zhou; Gang Tian; Minghui Han; Shengbing Huang; Yanyan Zhang; Xiaoyan Wu; Yuying Wu; Yang Li; Xingjin Yang; Yang Zhao; Yifei Feng; Dongsheng Hu; Ming Zhang
Journal:  J Hum Genet       Date:  2020-09-23       Impact factor: 3.172

8.  Type 2 Diabetes-Associated Genetic Variants Regulate Chromatin Accessibility in Human Islets.

Authors:  Shubham Khetan; Romy Kursawe; Ahrim Youn; Nathan Lawlor; Alexandria Jillette; Eladio J Marquez; Duygu Ucar; Michael L Stitzel
Journal:  Diabetes       Date:  2018-09-04       Impact factor: 9.461

Review 9.  Review of methods for detecting glycemic disorders.

Authors:  Michael Bergman; Muhammad Abdul-Ghani; Ralph A DeFronzo; Melania Manco; Giorgio Sesti; Teresa Vanessa Fiorentino; Antonio Ceriello; Mary Rhee; Lawrence S Phillips; Stephanie Chung; Celeste Cravalho; Ram Jagannathan; Louis Monnier; Claude Colette; David Owens; Cristina Bianchi; Stefano Del Prato; Mariana P Monteiro; João Sérgio Neves; Jose Luiz Medina; Maria Paula Macedo; Rogério Tavares Ribeiro; João Filipe Raposo; Brenda Dorcely; Nouran Ibrahim; Martin Buysschaert
Journal:  Diabetes Res Clin Pract       Date:  2020-06-01       Impact factor: 5.602

Review 10.  Advancing Diabetic Retinopathy Research: Analysis of the Neurovascular Unit in Zebrafish.

Authors:  Chiara Simone Middel; Hans-Peter Hammes; Jens Kroll
Journal:  Cells       Date:  2021-05-25       Impact factor: 6.600

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