Literature DB >> 28244990

The chemical evolution of oligonucleotide therapies of clinical utility.

Anastasia Khvorova1,2, Jonathan K Watts1,3.   

Abstract

After nearly 40 years of development, oligonucleotide therapeutics are nearing meaningful clinical productivity. One of the key advantages of oligonucleotide drugs is that their delivery and potency are derived primarily from the chemical structure of the oligonucleotide whereas their target is defined by the base sequence. Thus, as oligonucleotides with a particular chemical design show appropriate distribution and safety profiles for clinical gene silencing in a particular tissue, this will open the door to the rapid development of additional drugs targeting other disease-associated genes in the same tissue. To achieve clinical productivity, the chemical architecture of the oligonucleotide needs to be optimized with a combination of sugar, backbone, nucleobase, and 3'- and 5'-terminal modifications. A portfolio of chemistries can be used to confer drug-like properties onto the oligonucleotide as a whole, with minor chemical changes often translating into major improvements in clinical efficacy. One outstanding challenge in oligonucleotide chemical development is the optimization of chemical architectures to ensure long-term safety. There are multiple designs that enable effective targeting of the liver, but a second challenge is to develop architectures that enable robust clinical efficacy in additional tissues.

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Year:  2017        PMID: 28244990      PMCID: PMC5517098          DOI: 10.1038/nbt.3765

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN: 1087-0156            Impact factor:   54.908


  122 in total

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Journal:  Nature       Date:  2010-05-26       Impact factor: 49.962

Review 2.  Pharmacokinetics, biodistribution and cell uptake of antisense oligonucleotides.

Authors:  Richard S Geary; Daniel Norris; Rosie Yu; C Frank Bennett
Journal:  Adv Drug Deliv Rev       Date:  2015-02-07       Impact factor: 15.470

3.  Novel hydrophobically modified asymmetric RNAi compounds (sd-rxRNA) demonstrate robust efficacy in the eye.

Authors:  Michael Byrne; Radouil Tzekov; Yi Wang; Amanda Rodgers; James Cardia; Glenna Ford; Katherine Holton; Lakshmipathi Pandarinathan; Jennifer Lapierre; William Stanney; Karen Bulock; Sharon Shaw; Lyn Libertine; Kevin Fettes; Anastasia Khvorova; Shalesh Kaushal; Pamela Pavco
Journal:  J Ocul Pharmacol Ther       Date:  2013-11-01       Impact factor: 2.671

Review 4.  Oligonucleotide therapeutics: chemistry, delivery and clinical progress.

Authors:  Vivek K Sharma; Jonathan K Watts
Journal:  Future Med Chem       Date:  2015-10-29       Impact factor: 3.808

Review 5.  An overview of sugar-modified oligonucleotides for antisense therapeutics.

Authors:  Thazha P Prakash
Journal:  Chem Biodivers       Date:  2011-09       Impact factor: 2.408

6.  Therapeutic silencing of an endogenous gene by systemic administration of modified siRNAs.

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Journal:  Nature       Date:  2004-11-11       Impact factor: 49.962

7.  Nuclear antisense effects in cyclophilin A pre-mRNA splicing by oligonucleotides: a comparison of tricyclo-DNA with LNA.

Authors:  Damian Ittig; Songkai Liu; Dorte Renneberg; Daniel Schümperli; Christian J Leumann
Journal:  Nucleic Acids Res       Date:  2004-01-15       Impact factor: 16.971

8.  Safety and efficacy of RNAi therapy for transthyretin amyloidosis.

Authors:  Teresa Coelho; David Adams; Ana Silva; Pierre Lozeron; Philip N Hawkins; Timothy Mant; Javier Perez; Joseph Chiesa; Steve Warrington; Elizabeth Tranter; Malathy Munisamy; Rick Falzone; Jamie Harrop; Jeffrey Cehelsky; Brian R Bettencourt; Mary Geissler; James S Butler; Alfica Sehgal; Rachel E Meyers; Qingmin Chen; Todd Borland; Renta M Hutabarat; Valerie A Clausen; Rene Alvarez; Kevin Fitzgerald; Christina Gamba-Vitalo; Saraswathy V Nochur; Akshay K Vaishnaw; Dinah W Y Sah; Jared A Gollob; Ole B Suhr
Journal:  N Engl J Med       Date:  2013-08-29       Impact factor: 91.245

9.  Enhancing antisense efficacy with multimers and multi-targeting oligonucleotides (MTOs) using cleavable linkers.

Authors:  Romesh R Subramanian; Mark A Wysk; Kathleen M Ogilvie; Abhijit Bhat; Bing Kuang; Thomas D Rockel; Markus Weber; Eugen Uhlmann; Arthur M Krieg
Journal:  Nucleic Acids Res       Date:  2015-10-07       Impact factor: 16.971

10.  Ribonuclease H1-dependent hepatotoxicity caused by locked nucleic acid-modified gapmer antisense oligonucleotides.

Authors:  Takeshi Kasuya; Shin-Ichiro Hori; Ayahisa Watanabe; Mado Nakajima; Yoshinari Gahara; Masatomo Rokushima; Toru Yanagimoto; Akira Kugimiya
Journal:  Sci Rep       Date:  2016-07-27       Impact factor: 4.379

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  245 in total

Review 1.  Delivery of Oligonucleotides to the Liver with GalNAc: From Research to Registered Therapeutic Drug.

Authors:  Alexandre J Debacker; Jon Voutila; Matthew Catley; David Blakey; Nagy Habib
Journal:  Mol Ther       Date:  2020-06-17       Impact factor: 11.454

2.  Molecular Dynamics Study of the Hybridization between RNA and Modified Oligonucleotides.

Authors:  Zhifeng Jing; Rui Qi; Marc Thibonnier; Pengyu Ren
Journal:  J Chem Theory Comput       Date:  2019-10-09       Impact factor: 6.006

3.  Efficient Gene Silencing in Brain Tumors with Hydrophobically Modified siRNAs.

Authors:  Maire F Osborn; Andrew H Coles; Diane Golebiowski; Dimas Echeverria; Michael P Moazami; Jonathan K Watts; Miguel Sena-Esteves; Anastasia Khvorova
Journal:  Mol Cancer Ther       Date:  2018-04-13       Impact factor: 6.261

4.  miRNA displacement as a promising approach for cancer therapy.

Authors:  David Gilot; Marie-Dominique Galibert
Journal:  Mol Cell Oncol       Date:  2017-12-11

Review 5.  GalNAc-siRNA Conjugates: Leading the Way for Delivery of RNAi Therapeutics.

Authors:  Aaron D Springer; Steven F Dowdy
Journal:  Nucleic Acid Ther       Date:  2018-05-24       Impact factor: 5.486

Review 6.  Beyond DNA and RNA: The Expanding Toolbox of Synthetic Genetics.

Authors:  Alexander I Taylor; Gillian Houlihan; Philipp Holliger
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-06-03       Impact factor: 10.005

Review 7.  RNA interference for glioblastoma therapy: Innovation ladder from the bench to clinical trials.

Authors:  Eunice L Lozada-Delgado; Nilmary Grafals-Ruiz; Pablo E Vivas-Mejía
Journal:  Life Sci       Date:  2017-08-31       Impact factor: 5.037

Review 8.  Targeting RNA in mammalian systems with small molecules.

Authors:  Anita Donlic; Amanda E Hargrove
Journal:  Wiley Interdiscip Rev RNA       Date:  2018-05-03       Impact factor: 9.957

Review 9.  Lysosomal storage diseases.

Authors:  Frances M Platt; Alessandra d'Azzo; Beverly L Davidson; Elizabeth F Neufeld; Cynthia J Tifft
Journal:  Nat Rev Dis Primers       Date:  2018-10-01       Impact factor: 52.329

Review 10.  Non-coding RNAs in cardiovascular diseases: diagnostic and therapeutic perspectives.

Authors:  Wolfgang Poller; Stefanie Dimmeler; Stephane Heymans; Tanja Zeller; Jan Haas; Mahir Karakas; David-Manuel Leistner; Philipp Jakob; Shinichi Nakagawa; Stefan Blankenberg; Stefan Engelhardt; Thomas Thum; Christian Weber; Benjamin Meder; Roger Hajjar; Ulf Landmesser
Journal:  Eur Heart J       Date:  2018-08-01       Impact factor: 29.983

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