Literature DB >> 28244621

Computer-Assisted 3D Structure Elucidation of Natural Products using Residual Dipolar Couplings.

Eduardo Troche-Pesqueira1, Clemens Anklin2, Roberto R Gil3, Armando Navarro-Vázquez4,1.   

Abstract

An enhanced computer-assisted procedure for the determination of the relative configuration of natural products, which starts from the molecular formula and uses a combination of conventional 1D and 2D NMR spectra, and residual dipolar couplings (RDCs), is reported. Having already the data acquired (1D/2D NMR and RDCs), the procedure begins with the determination of the molecular constitution using standard computer-assisted structure elucidation (CASE) and is followed by fully automated determination of relative configuration through RDC analysis. In the case of moderately flexible molecules the simplest data-explaining conformational model is selected by the use of the Akaike information criterion.
© 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Keywords:  NMR spectroscopy; residual dipolar couplings; small molecules; stereochemistry; structural elucidation

Year:  2017        PMID: 28244621     DOI: 10.1002/anie.201612454

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  12 in total

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Review 2.  Residual Dipolar Couplings in Structure Determination of Natural Products.

Authors:  Gao-Wei Li; Han Liu; Feng Qiu; Xiao-Juan Wang; Xin-Xiang Lei
Journal:  Nat Prod Bioprospect       Date:  2018-06-25

Review 3.  Computationally-assisted discovery and structure elucidation of natural products.

Authors:  Alfarius Eko Nugroho; Hiroshi Morita
Journal:  J Nat Med       Date:  2019-05-15       Impact factor: 2.343

4.  Configuration determination by residual dipolar couplings: accessing the full conformational space by molecular dynamics with tensorial constraints.

Authors:  Pavleta Tzvetkova; Ulrich Sternberg; Thomas Gloge; Armando Navarro-Vázquez; Burkhard Luy
Journal:  Chem Sci       Date:  2019-07-29       Impact factor: 9.825

5.  Model-Free Approach for the Configurational Analysis of Marine Natural Products.

Authors:  Matthias Köck; Michael Reggelin; Stefan Immel
Journal:  Mar Drugs       Date:  2021-05-21       Impact factor: 5.118

6.  Unequivocal determination of caulamidines A and B: application and validation of new tools in the structure elucidation tool box.

Authors:  Dennis J Milanowski; Naoya Oku; Laura K Cartner; Heidi R Bokesch; R Thomas Williamson; Josep Saurí; Yizhou Liu; Kirill A Blinov; Yuanqing Ding; Xing-Cong Li; Daneel Ferreira; Larry A Walker; Shabana Khan; Michael T Davies-Coleman; James A Kelley; James B McMahon; Gary E Martin; Kirk R Gustafson
Journal:  Chem Sci       Date:  2017-11-06       Impact factor: 9.825

Review 7.  Computational Methodologies in the Exploration of Marine Natural Product Leads.

Authors:  Florbela Pereira; Joao Aires-de-Sousa
Journal:  Mar Drugs       Date:  2018-07-13       Impact factor: 5.118

8.  Determination of Configuration and Conformation of a Reserpine Derivative with Seven Stereogenic Centers Using Molecular Dynamics with RDC-Derived Tensorial Constraints*.

Authors:  Emine Sager; Pavleta Tzvetkova; Alvar D Gossert; Philippe Piechon; Burkhard Luy
Journal:  Chemistry       Date:  2020-10-01       Impact factor: 5.236

9.  Reference-free NOE NMR analysis.

Authors:  Martin R M Koos; Karl H G Schulz; Roberto R Gil
Journal:  Chem Sci       Date:  2020-08-31       Impact factor: 9.825

10.  Unequivocal structure confirmation of a breitfussin analog by anisotropic NMR measurements.

Authors:  Ikenna E Ndukwe; Yu-Hong Lam; Sunil K Pandey; Bengt E Haug; Annette Bayer; Edward C Sherer; Kirill A Blinov; R Thomas Williamson; Johan Isaksson; Mikhail Reibarkh; Yizhou Liu; Gary E Martin
Journal:  Chem Sci       Date:  2020-09-21       Impact factor: 9.825

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