Literature DB >> 28244542

Probing the structural basis and adsorption mechanism of an enzyme on nano-sized protein carriers.

Yanxiong Pan1, Sunanda Neupane1, Jasmin Farmakes1, Michael Bridges2, James Froberg3, Jiajia Rao4, Steven Y Qian5, Guodong Liu1, Yongki Choi3, Zhongyu Yang1.   

Abstract

Silica nanoparticles (SiNPs) are important nano-sized, solid-state carriers/hosts to load, store, and deliver biological or pharmaceutical cargoes. They are also good potential solid supports to immobilize proteins for fundamental protein structure and dynamics studies. However, precaution is necessary when using SiNPs in these areas because adsorption might alter the activity of the cargoes, especially when enzymes are loaded. Therefore, it becomes important to understand the structural basis of the cargo enzyme activity changes, if there is any. The high complexity and dynamics of the nano-bio interface present many challenges. Reported here is a comprehensive study of the structure, dynamics, and activity of a model enzyme, T4 lysozyme, upon adsorption to a few surface-modified SiNPs using several experimental techniques. Not surprisingly, a significant activity loss on each studied SiNP was found. The structural basis of the activity loss was identified based on results from a unique technique, the Electron Paramagnetic Resonance (EPR) spectroscopy, which probes structural information regardless of the complexity. Several docking models of the enzyme on SiNPs with different surfaces, at different enzyme-to-SiNP ratios are proposed. Interestingly, we found that the adsorbed enzyme can be desorbed via pH adjustment, which highlighted the potential to use SiNPs for enzyme/protein delivery or storage due to the high capacity. In order to use SiNPs as enzyme hosts, minimizing the enzymatic activity loss upon adsorption is needed. Lastly, the work outlined here demonstrate the use of EPR in probing structural information on the complex (inorganic)nano-bio interface.

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Year:  2017        PMID: 28244542     DOI: 10.1039/c7nr00276a

Source DB:  PubMed          Journal:  Nanoscale        ISSN: 2040-3364            Impact factor:   7.790


  3 in total

1.  Insights on the Structure, Molecular Weight and Activity of an Antibacterial Protein-Polymer Hybrid.

Authors:  Yanxiong Pan; Sunanda Neupane; Jasmin Farmakes; Myungkeun Oh; Kylie Bentz; Yongki Choi; Zhongyu Yang
Journal:  Chemphyschem       Date:  2018-02-01       Impact factor: 3.102

2.  Protocol for resolving enzyme orientation and dynamics in advanced porous materials via SDSL-EPR.

Authors:  Yanxiong Pan; Hui Li; Qiaobin Li; Mary Lenertz; Isabelle Schuster; Drew Jordahl; Xiao Zhu; Bingcan Chen; Zhongyu Yang
Journal:  STAR Protoc       Date:  2021-07-14

Review 3.  Protein Conformational Dynamics upon Association with the Surfaces of Lipid Membranes and Engineered Nanoparticles: Insights from Electron Paramagnetic Resonance Spectroscopy.

Authors:  Elka R Georgieva
Journal:  Molecules       Date:  2020-11-18       Impact factor: 4.411

  3 in total

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