Literature DB >> 28244448

Performance on absolute scattering intensity calibration and protein molecular weight determination at BL16B1, a dedicated SAXS beamline at SSRF.

Jianrong Zeng1, Fenggang Bian1, Jie Wang1, Xiuhong Li1, Yuzhu Wang1, Feng Tian1, Ping Zhou1.   

Abstract

The optical system and end-station of bending-magnet beamline BL16B1, dedicated to small-angle X-ray scattering (SAXS) at the Shanghai Synchrotron Radiation Facility, is described. Constructed in 2009 and upgraded in 2013, this beamline has been open to users since May 2009 and supports methodologies including SAXS, wide-angle X-ray scattering (WAXS), simultaneous SAXS/WAXS, grazing-incidence small-angle X-ray scattering (GISAXS) and anomalous small-angle X-ray scattering (ASAXS). Considering that an increasing necessity for absolute calibration of SAXS intensity has been recognized in in-depth investigations, SAXS intensity is re-stated according to the extent of data processing, and the absolute intensity is suggested to be a unified presentation of SAXS data in this article. Theory with a practical procedure for absolute intensity calibration is established based on BL16B1, using glass carbon and water as primary and secondary standards, respectively. The calibration procedure can be completed in minutes and shows good reliability under different conditions. An empirical line of scale factor estimation is also established for any specific SAXS setup at the beamline. Beamline performance on molecular weight (MW) determination is provided as a straightforward application and verification of the absolute intensity calibration. Results show good accuracy with a deviation of less than 10% compared with the known value, which is also the best attainable accuracy in recent studies using SAXS to measure protein MW. Fast MW measurement following the demonstrated method also enables an instant check or pre-diagnosis of the SAXS performance to improve the data acquisition.

Entities:  

Keywords:  SAXS; absolute intensity; beamline; calibration; molecular weight

Mesh:

Substances:

Year:  2017        PMID: 28244448     DOI: 10.1107/S1600577516019135

Source DB:  PubMed          Journal:  J Synchrotron Radiat        ISSN: 0909-0495            Impact factor:   2.616


  4 in total

1.  SAXSMoW 2.0: Online calculator of the molecular weight of proteins in dilute solution from experimental SAXS data measured on a relative scale.

Authors:  Vassili Piiadov; Evandro Ares de Araújo; Mario Oliveira Neto; Aldo Felix Craievich; Igor Polikarpov
Journal:  Protein Sci       Date:  2018-12-13       Impact factor: 6.725

2.  Exploring nanoscale structure change of dermal tissues suffering injury by small angle X-ray scattering and transmission electron microscopy.

Authors:  Yuzhi Jiang; Feng Tian; Zhiyong Wang; Yiwen Niu; Jianfei Yang; Fei Song; Shuwen Jin; Yemin Cao; Jiaoyun Dong; Shuliang Lu
Journal:  Mol Biol Rep       Date:  2018-10-29       Impact factor: 2.316

Review 3.  Evolving SAXS versatility: solution X-ray scattering for macromolecular architecture, functional landscapes, and integrative structural biology.

Authors:  Chris A Brosey; John A Tainer
Journal:  Curr Opin Struct Biol       Date:  2019-06-13       Impact factor: 6.809

4.  Short-Distance Intermolecular Correlations of Mono- and Disaccharides in Condensed Solutions: Bulky Character of Trehalose.

Authors:  Mitsuhiro Hirai; Satoshi Ajito; Tatsuo Iwasa; Durige Wen; Noriyuki Igarashi; Nobutaka Shimizu
Journal:  ACS Omega       Date:  2020-05-05
  4 in total

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