Literature DB >> 28244442

A convolutional neural network approach to calibrating the rotation axis for X-ray computed tomography.

Xiaogang Yang1, Francesco De Carlo1, Charudatta Phatak2, Dogˇa Gürsoy1.   

Abstract

This paper presents an algorithm to calibrate the center-of-rotation for X-ray tomography by using a machine learning approach, the Convolutional Neural Network (CNN). The algorithm shows excellent accuracy from the evaluation of synthetic data with various noise ratios. It is further validated with experimental data of four different shale samples measured at the Advanced Photon Source and at the Swiss Light Source. The results are as good as those determined by visual inspection and show better robustness than conventional methods. CNN has also great potential for reducing or removing other artifacts caused by instrument instability, detector non-linearity, etc. An open-source toolbox, which integrates the CNN methods described in this paper, is freely available through GitHub at tomography/xlearn and can be easily integrated into existing computational pipelines available at various synchrotron facilities. Source code, documentation and information on how to contribute are also provided.

Keywords:  Python; convolutional neural network; open-source; rotation axis; tomography reconstruction

Year:  2017        PMID: 28244442     DOI: 10.1107/S1600577516020117

Source DB:  PubMed          Journal:  J Synchrotron Radiat        ISSN: 0909-0495            Impact factor:   2.616


  9 in total

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Authors:  Doğa Gürsoy; Young P Hong; Kuan He; Karl Hujsak; Seunghwan Yoo; Si Chen; Yue Li; Mingyuan Ge; Lisa M Miller; Yong S Chu; Vincent De Andrade; Kai He; Oliver Cossairt; Aggelos K Katsaggelos; Chris Jacobsen
Journal:  Sci Rep       Date:  2017-09-18       Impact factor: 4.379

2.  Tomosaic: efficient acquisition and reconstruction of teravoxel tomography data using limited-size synchrotron X-ray beams.

Authors:  Rafael Vescovi; Ming Du; Vincent de Andrade; William Scullin; Dogˇa Gürsoy; Chris Jacobsen
Journal:  J Synchrotron Radiat       Date:  2018-08-21       Impact factor: 2.616

3.  Automatic projection image registration for nanoscale X-ray tomographic reconstruction.

Authors:  Haiyan Yu; Sihao Xia; Chenxi Wei; Yuwei Mao; Daniel Larsson; Xianghui Xiao; Piero Pianetta; Young Sang Yu; Yijin Liu
Journal:  J Synchrotron Radiat       Date:  2018-10-23       Impact factor: 2.616

4.  Foam-like phantoms for comparing tomography algorithms.

Authors:  Daniël M Pelt; Allard A Hendriksen; Kees Joost Batenburg
Journal:  J Synchrotron Radiat       Date:  2022-01-01       Impact factor: 2.616

5.  Fast and noise-tolerant determination of the center of rotation in tomography.

Authors:  Everett Vacek; Chris Jacobsen
Journal:  J Synchrotron Radiat       Date:  2022-01-19       Impact factor: 2.616

6.  Low-dose x-ray tomography through a deep convolutional neural network.

Authors:  Xiaogang Yang; Vincent De Andrade; William Scullin; Eva L Dyer; Narayanan Kasthuri; Francesco De Carlo; Doğa Gürsoy
Journal:  Sci Rep       Date:  2018-02-07       Impact factor: 4.379

7.  A convolutional neural network-based screening tool for X-ray serial crystallography.

Authors:  Tsung Wei Ke; Aaron S Brewster; Stella X Yu; Daniela Ushizima; Chao Yang; Nicholas K Sauter
Journal:  J Synchrotron Radiat       Date:  2018-04-24       Impact factor: 2.616

8.  Tomographic reconstruction with a generative adversarial network.

Authors:  Xiaogang Yang; Maik Kahnt; Dennis Brückner; Andreas Schropp; Yakub Fam; Johannes Becher; Jan Dierk Grunwaldt; Thomas L Sheppard; Christian G Schroer
Journal:  J Synchrotron Radiat       Date:  2020-02-18       Impact factor: 2.616

9.  Machine learning and big scientific data.

Authors:  Tony Hey; Keith Butler; Sam Jackson; Jeyarajan Thiyagalingam
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2020-01-20       Impact factor: 4.226

  9 in total

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