Literature DB >> 28240220

Theory and algorithms to compute Helfrich bending forces: a review.

Achim Guckenberger1, Stephan Gekle.   

Abstract

Cell membranes are vital to shield a cell's interior from the environment. At the same time they determine to a large extent the cell's mechanical resistance to external forces. In recent years there has been considerable interest in the accurate computational modeling of such membranes, driven mainly by the amazing variety of shapes that red blood cells and model systems such as vesicles can assume in external flows. Given that the typical height of a membrane is only a few nanometers while the surface of the cell extends over many micrometers, physical modeling approaches mostly consider the interface as a two-dimensional elastic continuum. Here we review recent modeling efforts focusing on one of the computationally most intricate components, namely the membrane's bending resistance. We start with a short background on the most widely used bending model due to Helfrich. While the Helfrich bending energy by itself is an extremely simple model equation, the computation of the resulting forces is far from trivial. At the heart of these difficulties lies the fact that the forces involve second order derivatives of the local surface curvature which by itself is the second derivative of the membrane geometry. We systematically derive and compare the different routes to obtain bending forces from the Helfrich energy, namely the variational approach and the thin-shell theory. While both routes lead to mathematically identical expressions, so-called linear bending models are shown to reproduce only the leading order term while higher orders differ. The main part of the review contains a description of various computational strategies which we classify into three categories: the force, the strong and the weak formulation. We finally give some examples for the application of these strategies in actual simulations.

Year:  2017        PMID: 28240220     DOI: 10.1088/1361-648X/aa6313

Source DB:  PubMed          Journal:  J Phys Condens Matter        ISSN: 0953-8984            Impact factor:   2.333


  12 in total

1.  Flow-accelerated platelet biogenesis is due to an elasto-hydrodynamic instability.

Authors:  Christian Bächer; Markus Bender; Stephan Gekle
Journal:  Proc Natl Acad Sci U S A       Date:  2020-07-27       Impact factor: 11.205

2.  Antimargination of Microparticles and Platelets in the Vicinity of Branching Vessels.

Authors:  Christian Bächer; Alexander Kihm; Lukas Schrack; Lars Kaestner; Matthias W Laschke; Christian Wagner; Stephan Gekle
Journal:  Biophys J       Date:  2018-07-17       Impact factor: 4.033

3.  Creeping motion of a solid particle inside a spherical elastic cavity.

Authors:  Abdallah Daddi-Moussa-Ider; Hartmut Löwen; Stephan Gekle
Journal:  Eur Phys J E Soft Matter       Date:  2018-09-11       Impact factor: 1.890

4.  Mechanical design of apertures and the infolding of pollen grain.

Authors:  Anže Božič; Antonio Šiber
Journal:  Proc Natl Acad Sci U S A       Date:  2020-10-07       Impact factor: 11.205

5.  Brownian motion near an elastic cell membrane: A theoretical study.

Authors:  Abdallah Daddi-Moussa-Ider; Stephan Gekle
Journal:  Eur Phys J E Soft Matter       Date:  2018-02-08       Impact factor: 1.890

Review 6.  Glycan-decorated protocells: novel features for rebuilding cellular processes.

Authors:  Ramin Omidvar; Winfried Römer
Journal:  Interface Focus       Date:  2019-02-15       Impact factor: 3.906

7.  Quantifying the roles of space and stochasticity in computer simulations for cell biology and cellular biochemistry.

Authors:  M E Johnson; A Chen; J R Faeder; P Henning; I I Moraru; M Meier-Schellersheim; R F Murphy; T Prüstel; J A Theriot; A M Uhrmacher
Journal:  Mol Biol Cell       Date:  2020-11-25       Impact factor: 4.138

8.  Red blood cell shape transitions and dynamics in time-dependent capillary flows.

Authors:  Steffen M Recktenwald; Katharina Graessel; Felix M Maurer; Thomas John; Stephan Gekle; Christian Wagner
Journal:  Biophys J       Date:  2021-12-09       Impact factor: 4.033

9.  Exploring new roles for actin upon LTP induction in dendritic spines.

Authors:  Mayte Bonilla-Quintana; Florentin Wörgötter
Journal:  Sci Rep       Date:  2021-03-29       Impact factor: 4.379

10.  Biomembranes undergo complex, non-axisymmetric deformations governed by Kirchhoff-Love kinematicsand revealed by a three-dimensional computational framework.

Authors:  Debabrata Auddya; Xiaoxuan Zhang; Rahul Gulati; Ritvik Vasan; Krishna Garikipati; Padmini Rangamani; Shiva Rudraraju
Journal:  Proc Math Phys Eng Sci       Date:  2021-11-10       Impact factor: 2.704

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