Literature DB >> 28238863

Reporting of lipidomics data should be standardized.

Gerhard Liebisch1, Kim Ekroos2, Martin Hermansson3, Christer S Ejsing4.   

Abstract

This article highlights, to our opinion, some of the most pertinent issues related to producing high quality lipidomics data. These issues include pitfalls related to sample collection and storage, lipid extraction, the use of shotgun and LC-MS-based lipidomics approaches, and the identification, annotation and quantification of lipid species. We hope that highlighting these issues will help stimulate efforts to implement reporting standards for dissemination of lipidomics data. This article is part of a Special Issue entitled: BBALIP_Lipidomics Opinion Articles edited by Sepp Kohlwein.
Copyright © 2017 Elsevier B.V. All rights reserved.

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Year:  2017        PMID: 28238863     DOI: 10.1016/j.bbalip.2017.02.013

Source DB:  PubMed          Journal:  Biochim Biophys Acta Mol Cell Biol Lipids        ISSN: 1388-1981            Impact factor:   4.698


  21 in total

1.  NIST lipidomics workflow questionnaire: an assessment of community-wide methodologies and perspectives.

Authors:  John A Bowden; Candice Z Ulmer; Christina M Jones; Jeremy P Koelmel; Richard A Yost
Journal:  Metabolomics       Date:  2018-03-20       Impact factor: 4.290

2.  Three-phase liquid extraction: a simple and fast method for lipidomic workflows.

Authors:  Gonçalo Vale; Sarah A Martin; Matthew A Mitsche; Bonne M Thompson; Kaitlyn M Eckert; Jeffrey G McDonald
Journal:  J Lipid Res       Date:  2019-01-04       Impact factor: 5.922

3.  Dual mass spectrometry as a tool to improve annotation and quantification in targeted plasma lipidomics.

Authors:  Liang Gao; Amaury Cazenave-Gassiot; Bo Burla; Markus R Wenk; Federico Torta
Journal:  Metabolomics       Date:  2020-04-17       Impact factor: 4.290

4.  Proposal for a common nomenclature for fragment ions in mass spectra of lipids.

Authors:  Josch K Pauling; Martin Hermansson; Jürgen Hartler; Klaus Christiansen; Sandra F Gallego; Bing Peng; Robert Ahrends; Christer S Ejsing
Journal:  PLoS One       Date:  2017-11-21       Impact factor: 3.240

Review 5.  Biofluid lipidome: a source for potential diagnostic biomarkers.

Authors:  Arkasubhra Ghosh; Krishnatej Nishtala
Journal:  Clin Transl Med       Date:  2017-06-20

6.  MS-based lipidomics of human blood plasma: a community-initiated position paper to develop accepted guidelines.

Authors:  Bo Burla; Makoto Arita; Masanori Arita; Anne K Bendt; Amaury Cazenave-Gassiot; Edward A Dennis; Kim Ekroos; Xianlin Han; Kazutaka Ikeda; Gerhard Liebisch; Michelle K Lin; Tze Ping Loh; Peter J Meikle; Matej Orešič; Oswald Quehenberger; Andrej Shevchenko; Federico Torta; Michael J O Wakelam; Craig E Wheelock; Markus R Wenk
Journal:  J Lipid Res       Date:  2018-08-16       Impact factor: 5.922

7.  Accurate Lipid Quantification of Tissue Homogenates Requires Suitable Sample Concentration, Solvent Composition, and Homogenization Procedure-A Case Study in Murine Liver.

Authors:  Marcus Höring; Sabrina Krautbauer; Louisa Hiltl; Verena Babl; Alexander Sigruener; Ralph Burkhardt; Gerhard Liebisch
Journal:  Metabolites       Date:  2021-06-08

8.  Tissue storage affects lipidome profiling in comparison to in vivo microsampling approach.

Authors:  Anna Roszkowska; Miao Yu; Vincent Bessonneau; Leslie Bragg; Mark Servos; Janusz Pawliszyn
Journal:  Sci Rep       Date:  2018-05-03       Impact factor: 4.379

9.  Untargeted lipidomic analysis to broadly characterize the effects of pathogenic and non-pathogenic staphylococci on mammalian lipids.

Authors:  Naren Gajenthra Kumar; Daniel Contaifer; Paul R S Baker; Kim Ekroos; Kimberly K Jefferson; Dayanjan S Wijesinghe
Journal:  PLoS One       Date:  2018-10-31       Impact factor: 3.240

10.  Unequivocal Mapping of Molecular Ether Lipid Species by LC-MS/MS in Plasmalogen-Deficient Mice.

Authors:  Jakob Koch; Katharina Lackner; Yvonne Wohlfarter; Sabrina Sailer; Johannes Zschocke; Ernst R Werner; Katrin Watschinger; Markus A Keller
Journal:  Anal Chem       Date:  2020-08-07       Impact factor: 8.008

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