Literature DB >> 28236292

The role of genomics in common variable immunodeficiency disorders.

A-K Kienzler1, C E Hargreaves1, S Y Patel1.   

Abstract

The advent of next-generation sequencing (NGS) and 'omic' technologies has revolutionized the field of genetics, and its implementation in health care has the potential to realize precision medicine. Primary immunodeficiencies (PID) are a group of rare diseases which have benefited from NGS, with a massive increase in causative genes identified in the past few years. Common variable immunodeficiency disorders (CVID) are a heterogeneous form of PID and the most common form of antibody failure in children and adults. While a monogenic cause of disease has been identified in a small subset of CVID patients, a genomewide association study and whole genome sequencing have found that, in the majority, a polygenic cause is likely. Other NGS technologies such as RNA sequencing and epigenetic studies have contributed further to our understanding of the contribution of altered gene expression in CVID pathogenesis. We believe that to unravel further the complexities of CVID, a multi-omic approach, combining DNA sequencing with gene expression, methylation, proteomic and metabolomics data, will be essential to identify novel disease-associated pathways and therapeutic targets.
© 2017 British Society for Immunology.

Entities:  

Keywords:  CVID; genomics; immunodeficiency

Mesh:

Year:  2017        PMID: 28236292      PMCID: PMC5422717          DOI: 10.1111/cei.12947

Source DB:  PubMed          Journal:  Clin Exp Immunol        ISSN: 0009-9104            Impact factor:   4.330


  48 in total

Review 1.  Diagnostic clinical genome and exome sequencing.

Authors:  Leslie G Biesecker; Robert C Green
Journal:  N Engl J Med       Date:  2014-06-19       Impact factor: 91.245

2.  A system for rapid DNA sequencing with fluorescent chain-terminating dideoxynucleotides.

Authors:  J M Prober; G L Trainor; R J Dam; F W Hobbs; C W Robertson; R J Zagursky; A J Cocuzza; M A Jensen; K Baumeister
Journal:  Science       Date:  1987-10-16       Impact factor: 47.728

3.  A genetic defect in "acquired" agammaglobulinemia.

Authors:  R M Kamin; H H Fudenberg; S D Douglas
Journal:  Proc Natl Acad Sci U S A       Date:  1968-07       Impact factor: 11.205

4.  CD81 gene defect in humans disrupts CD19 complex formation and leads to antibody deficiency.

Authors:  Menno C van Zelm; Julie Smet; Brigitte Adams; Françoise Mascart; Liliane Schandené; Françoise Janssen; Alina Ferster; Chiung-Chi Kuo; Shoshana Levy; Jacques J M van Dongen; Mirjam van der Burg
Journal:  J Clin Invest       Date:  2010-03-08       Impact factor: 14.808

5.  Rare variants at 16p11.2 are associated with common variable immunodeficiency.

Authors:  S Melkorka Maggadottir; Jin Li; Joseph T Glessner; Yun Rose Li; Zhi Wei; Xiao Chang; Frank D Mentch; Kelly A Thomas; Cecilia E Kim; Yan Zhao; Cuiping Hou; Fengxiang Wang; Silje F Jørgensen; Elena E Perez; Kathleen E Sullivan; Jordan S Orange; Tom H Karlsen; Helen Chapel; Charlotte Cunningham-Rundles; Hakon Hakonarson
Journal:  J Allergy Clin Immunol       Date:  2015-02-10       Impact factor: 10.793

6.  The interleukin-2 receptor gamma chain maps to Xq13.1 and is mutated in X-linked severe combined immunodeficiency, SCIDX1.

Authors:  J M Puck; S M Deschênes; J C Porter; A S Dutra; C J Brown; H F Willard; P S Henthorn
Journal:  Hum Mol Genet       Date:  1993-08       Impact factor: 6.150

7.  The gene involved in X-linked agammaglobulinaemia is a member of the src family of protein-tyrosine kinases.

Authors:  D Vetrie; I Vorechovský; P Sideras; J Holland; A Davies; F Flinter; L Hammarström; C Kinnon; R Levinsky; M Bobrow
Journal:  Nature       Date:  1993-01-21       Impact factor: 49.962

8.  Monozygotic twins discordant for common variable immunodeficiency reveal impaired DNA demethylation during naïve-to-memory B-cell transition.

Authors:  Virginia C Rodríguez-Cortez; Lucia Del Pino-Molina; Javier Rodríguez-Ubreva; Laura Ciudad; David Gómez-Cabrero; Carlos Company; José M Urquiza; Jesper Tegnér; Carlos Rodríguez-Gallego; Eduardo López-Granados; Esteban Ballestar
Journal:  Nat Commun       Date:  2015-06-17       Impact factor: 14.919

9.  An integrated map of genetic variation from 1,092 human genomes.

Authors:  Goncalo R Abecasis; Adam Auton; Lisa D Brooks; Mark A DePristo; Richard M Durbin; Robert E Handsaker; Hyun Min Kang; Gabor T Marth; Gil A McVean
Journal:  Nature       Date:  2012-11-01       Impact factor: 49.962

10.  Shared and distinct transcriptional programs underlie the hybrid nature of iNKT cells.

Authors:  Nadia R Cohen; Patrick J Brennan; Tal Shay; Gerald F Watts; Manfred Brigl; Joonsoo Kang; Michael B Brenner
Journal:  Nat Immunol       Date:  2012-12-02       Impact factor: 25.606

View more
  28 in total

1.  Clinical challenges in the management of patients with B cell immunodeficiencies.

Authors:  J P Hodkinson; H Chapel
Journal:  Clin Exp Immunol       Date:  2017-06       Impact factor: 4.330

Review 2.  B-cell receptor repertoire sequencing in patients with primary immunodeficiency: a review.

Authors:  Marie Ghraichy; Jacob D Galson; Dominic F Kelly; Johannes Trück
Journal:  Immunology       Date:  2017-12-18       Impact factor: 7.397

3.  Nonpermissive bone marrow environment impairs early B-cell development in common variable immunodeficiency.

Authors:  Arianna Troilo; Claudia Wehr; Iga Janowska; Nils Venhoff; Jens Thiel; Justyna Rawluk; Natalie Frede; Julian Staniek; Raquel Lorenzetti; Marei-Theresa Schleyer; Georg W Herget; Lukas Konstantinidis; Miriam Erlacher; Michele Proietti; Nadezhda Camacho-Ordonez; Reinhard Edmund Voll; Bodo Grimbacher; Klaus Warnatz; Ulrich Salzer; Marta Rizzi
Journal:  Blood       Date:  2020-04-23       Impact factor: 22.113

4.  BAFF-driven B cell hyperplasia underlies lung disease in common variable immunodeficiency.

Authors:  Paul J Maglione; Gavin Gyimesi; Montserrat Cols; Lin Radigan; Huaibin M Ko; Tamar Weinberger; Brian H Lee; Emilie K Grasset; Adeeb H Rahman; Andrea Cerutti; Charlotte Cunningham-Rundles
Journal:  JCI Insight       Date:  2019-03-07

Review 5.  Review: Diagnosing Common Variable Immunodeficiency Disorder in the Era of Genome Sequencing.

Authors:  Rohan Ameratunga; Klaus Lehnert; See-Tarn Woon; David Gillis; Vanessa L Bryant; Charlotte A Slade; Richard Steele
Journal:  Clin Rev Allergy Immunol       Date:  2018-04       Impact factor: 8.667

6.  RP-HPLC-ESI-IT Mass Spectrometry Reveals Significant Variations of the Human Salivary Protein Profile Associated with Predominantly Antibody Deficiencies.

Authors:  Cristina Contini; Davide Firinu; Simone Serrao; Barbara Manconi; Alessandra Olianas; Francesco Cinetto; Fausto Cossu; Massimo Castagnola; Irene Messana; Stefano Del Giacco; Tiziana Cabras
Journal:  J Clin Immunol       Date:  2020-01-08       Impact factor: 8.317

7.  Primary antibody deficiencies in Turkey: molecular and clinical aspects.

Authors:  Sinem Firtina; Yuk Yin Ng; Ozden H Ng; Ayca Kiykim; Esra Yucel Ozek; Manolya Kara; Elif Aydiner; Serdar Nepesov; Yildiz Camcioglu; Esra H Sayar; Ezgi Yalcin Gungoren; Ismail Reisli; Selda H Torun; Sule Haskologlu; Tuba Cogurlu; Aysenur Kaya; Sukru Cekic; Safa Baris; Ugur Ozbek; Ahmet Ozen; Muge Sayitoglu
Journal:  Immunol Res       Date:  2021-10-07       Impact factor: 2.829

Review 8.  State-of-the-art diagnostic evaluation of common variable immunodeficiency.

Authors:  Theodore K Lee; Jessica D Gereige; Paul J Maglione
Journal:  Ann Allergy Asthma Immunol       Date:  2021-03-11       Impact factor: 6.248

9.  Delayed Diagnosis and Complications of Predominantly Antibody Deficiencies in a Cohort of Australian Adults.

Authors:  Charlotte A Slade; Julian J Bosco; Tran Binh Giang; Elizabeth Kruse; Robert G Stirling; Paul U Cameron; Fiona Hore-Lacy; Michael F Sutherland; Sara L Barnes; Stephen Holdsworth; Samar Ojaimi; Gary A Unglik; Joseph De Luca; Mittal Patel; Jeremy McComish; Kymble Spriggs; Yang Tran; Priscilla Auyeung; Katherine Nicholls; Robyn E O'Hehir; Philip D Hodgkin; Jo A Douglass; Vanessa L Bryant; Menno C van Zelm
Journal:  Front Immunol       Date:  2018-05-14       Impact factor: 7.561

10.  Evaluating the Genetics of Common Variable Immunodeficiency: Monogenetic Model and Beyond.

Authors:  Guillem de Valles-Ibáñez; Ana Esteve-Solé; Mònica Piquer; E Azucena González-Navarro; Jessica Hernandez-Rodriguez; Hafid Laayouni; Eva González-Roca; Ana María Plaza-Martin; Ángela Deyà-Martínez; Andrea Martín-Nalda; Mónica Martínez-Gallo; Marina García-Prat; Lucía Del Pino-Molina; Ivón Cuscó; Marta Codina-Solà; Laura Batlle-Masó; Manuel Solís-Moruno; Tomàs Marquès-Bonet; Elena Bosch; Eduardo López-Granados; Juan Ignacio Aróstegui; Pere Soler-Palacín; Roger Colobran; Jordi Yagüe; Laia Alsina; Manel Juan; Ferran Casals
Journal:  Front Immunol       Date:  2018-05-14       Impact factor: 7.561

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.