Literature DB >> 28224130

1H NMR spectra dataset and solid-state NMR data of cowpea (Vigna unguiculata).

Elenilson G Alves Filho1, Lorena M A Silva2, Elizita M Teofilo3, Flemming H Larsen4, Edy S de Brito2.   

Abstract

In this article the NMR data from chemical shifts, coupling constants, and structures of all the characterized compounds were provided, beyond a complementary PCA evaluation for the corresponding manuscript (E.G. Alves Filho, L.M.A. Silva, E.M. Teofilo, F.H. Larsen, E.S. de Brito, 2017) [3]. In addition, a complementary assessment from solid-state NMR data was provided. For further chemometric analysis, numerical matrices from the raw 1H NMR data were made available in Microsoft Excel workbook format (.xls).

Entities:  

Keywords:  1H qNMR; CP-MAS; Chemometrics; Cowpea seeds; SP/MAS

Year:  2017        PMID: 28224130      PMCID: PMC5310203          DOI: 10.1016/j.dib.2017.01.013

Source DB:  PubMed          Journal:  Data Brief        ISSN: 2352-3409


Specifications Table Value of the data The NMR data (chemical shifts and coupling constants) and structures may be helpful to other NMR spectroscopists in the assignment of signals in complex matrices as food. Useful to be used as reference for the characterization of organic compounds through NMR. Numerical matrices from the raw 1H NMR data were made available for complementary evaluation, or construction of NMR database, or useful for the development of new chemometric algorithms. The data provide a comprehensive and complementary comparison among different genotypes of cowpea seeds using 1H-NMR combined with chemometrics and solid-state NMR.

Data

Table 1 presents the morphoagronomic characteristics of the cowpea seeds. Table 2 illustrates the structures of the 30 compounds identified in cowpea seeds with the corresponding 1H and 13C NMR chemical shifts, multiplicity, and constant coupling [4], [5], [6], [7], [8], [10]. PC1 vs. PC3 scores and loadings coordinate system for different cultivars of cowpea evaluating only the aromatic region are presented in Fig. 1. Fig. 2, Fig. 3 show the comparison of the 13C CP-MAS and the 13C SP-MAS spectra of the cowpea seeds [3].
Table 1

Morphoagronomic characteristics of the nine seeds of cowpea.

Register numberAccess nameColorTextureShapeWeight
CE-25Sempre VerdeGreenFlatRhomboid12.7
CE-31PitiubaBrownFlatReniform19.4
CE-44NovatoBrownFlatRhomboid21.8
CE-315Tvu 233GreenFlatOvoid12.9
CE-584CE-584BrownFlatReniform23.0
CE-596SetentãoGreenFlatRhomboid16.9
CE-873Epace 10BrownFlatRhomboid19.4
CE-930Pingo de OuroBrownFlatRhomboid19.8
CE-967Tvu 382Black - WhiteFlatOvoid8.7
Table 2

Organic compounds identified in cowpea seeds.

Compounds /Structuresδ 1Hδ 13CRef.Ref.
(multip.*, J in Hz)1H13C
Amino Acids
3 – 1.42 (d 7.2)2 – 4.31 (o)19.156.11.52 (d, 7.3)3.90 (q, 7.3)19.153.4
2,5 – 4.39 (o)3,4 – 2.86; 3.02 (o)57.238.94.10 (dd 8.21, 3.91)3.18;3.38 (ddd 14.94, 8.21, 3.91)56.140.5
1 –174.5177.0
5 – 2.17 (s)17.72.10 (s)16.6
3 – 2.0730.22.17 (m)32.7
4 – 2.3934.12.63 (t 7.59)31.6
2 – 3.8057.33.85 (dd 7.10; 5.38)56.8
2 – 3.51 (o)o3.57 (d 4.87)63.5
3 – 4.26 (o)69.84.24 (m)68.9
4 – 1.33 (o)22.31.32 (d 6.58)22.3
6 – 3.2343.63.32 (m)49.0
5 – 1.7129.31.99 (m)26.4
2 – 3.8163.34.12 (dd 8.83; 8.42)64.0
3 – 2.2029.42.34 (m)31.7
4 – 1.9230.62.07 (m)31.7
5 – 3.24 (o)43.63.23 (t 6.93)43.3
4 – 1.66 (m)27.31.68 (m)26.4
3 – 2.17 (m)29.41.91 (m)30.5
2 – 3.79 (o)57.33.76 (t 6.11)57.3
2 – 3.62 (o)o3.82 (d 4.4)n
3 – 2.16 (o)20.22.33 (m)32.0
4 – 0.91 (o)21.71.02 (d 7.1)19.1
5 – 0.91 (o)21.71.06 (d 7.1)20.9
2 – 3.81 (o)46.83.55 (s)44.3
3 – 3.8057.43.83 (dd 5.58; 3.80)59.2
2 – 3.8363.23.95 (m)63.1
1 –176.9no
2 – 4.01 (o)54.33.90 (no)55.1
3 – 2.86; 3.00 (m)38.82.71; 2.80 (no)39.4
4 –175.8no
1 –174.1177.2
2 – 3.80 (o)57.33.74 (dd 7.19; 4.72)57.6
3 – 2.17 (o)29.32.08 (m)29.8
4 – 2.54 (o)34.82.34 (m)36.3
6,8 – 6.83 (m)118.26.89 (m)118.9
5,9 – 7.10 (m)133.17.19 (m)133.5
5,9 – 7.24 (m)132.07.32 (d 6.98)132.1
6,8 – 7.42 (m)131.87.42 (m)131.8
7 – 7.32 (m)131.77.37 (m)130.4
8 – 7.84 (m)119.07.71121.2
7 – 7.42 (m)119.87.52114.7
5 – 7.33 (m)125.67.30127.9
10 – 7.24 (m)112.67.26124.9
9 – 7.10 (m)122.27.19122.2
2 – oo4.0457.9
3 – oo3.4629.1
1 –no176.1
Organic Acids
3 – 1.32 (d 7.20)21.71.37 (d 7.20)22.9
2 – 4.07 (o)72.34.42 (q 7.20)71.4
4 – 2.88 (m)39.22.99 (t 7,6)42.2
3 – 2.06 (m)30.81.88 (qui 7,6)26.3
2 – 2.43 (m)34.52.28 (t 7,6)37.1
1 –no166.2
2 –140.5127.2
3 – 9.10148.48.97152.8
4 – 8.83147.28.61151.4
5 – 8.07130.37.54123.3
6 – 8.80148.58.26145.6
1 –181.2184.1
2 – 1.94 (s)26.22.08 (s)26.0
1 – 8.48 (s)no8.39 (s)172.4
4,6 –181.2181.9
3 – 2.58 (d 15.6)47.62.68 (d 15.2)45.5
3 – 2.71 (d 15.6)47.62.85 (d 15.2)45.5
2 – 4.44 (m)69.24.28 (m)73.2
1 –
2 – 4.4173.44.2973.2
3 – 2.85; 3.0138.72.34; 2.6545.5
4 –
8,14 – 2.0629.92.0527.2
2 – 2.3834.02.3434.0
11 – 2.7728.42.7725.6
10,12 – 5.30130.85.33128.1
9,13 – 5.33132.55.37130.2
Carbohydrates
1 – 5.23 (o)95.15.25 (d 3.80)95.4
2 – 3.47 (m)72.33.89-3.36 (o)72.2
3 – 3.77 (m)75.6n76.0
4 – 3.56 (m)74.0n72.8
5 – 3.72 (m)63.9n64.2
6 – 3.85 (m)75.5n74.5
1 – 4.64 (o)99.34.66 (d 8.10)99.2
2 – 3.26 (m)77.53.25 (t 8.40)77.6
3 – 3.75 (m)63.6n56.1
4 – 3.48 (m)78.8n79.0
5 – 3.41 (m)72.2n72.8
6 – 3.90 (m)63.7n63.1
1 – 5.42 (d 3.7)95.05.44 (d 3.8)94.7
3’ – 4.05 (m)77,04.08 (t 8.4)76,6
4’ – 4.22 (m)79,34.24 (d 9.0)79,0
1 – 5.02 (m)101.14.98 (d 3.80)101.1
7 – 5.42 (d 3.81)95.05.42 (d 3.85)94.6
15 – 4.24 (m)79.34.22 (d 8.80)79.9
1 – 5.02 (m)101.14.98 (m)100.9
7,13 – 5.44 (d 3.81)95.05.42 (d 3.80)94.8
21 – 4.24 (m)79.34.22 (d 8.80)79.9
1 – 5.02 (m)101.14.98 (m)100.9
7,13,19 – 5.46 (d 3.81)95.05.42 (d 3.80)94.8
3´´´´ – 4.24 (m)79.34.22 (d 8.80)79.9
Other Compounds
1 – 4.00 (o)54.24.05 (m)58.5
3 – 3.19 (s)56.53.19 (s)56.7
2 – 3.51 (o)70.43.50 (dd 5.82; 4.16)70.1
2 – 5.91105.25.79103.7
3 – 7.85144.77.56146.2

s – simplet; d – duplet; t – triplet; q – quadruplet; quin – quintet; dd – double duplet; o – overlapping signal; n – no information; no – not observed.

Fig. 1

PC1 vs. PC3 scores (left side) and loadings (right side) coordinate system for different cultivars of cowpea analysing only aromatic region.

Fig. 2

13C CP-MAS spectra of the cowpea seed with a) Sempre Verde; b) Tvu 233; c) Pitiuba; d) Novato; e) CE-584; f) Setentão; g) Pingo de Ouro; h) Tvu 382; i) Epace 10.

Fig. 3

13C SP-MAS spectra of the cowpea seed with a) Sempre Verde; b) Tvu 233; c) Pitiuba; d) Novato; e) CE-584; f) Setentão; g) Pingo de Ouro; h) Tvu 382; i) Epace 10.

Experimental design, materials and methods

Fig. 4 presents nine cowpea seeds from the germplasm bank of the Center of Agricultural Science at Federal University of Ceará (CCA/UFC), Brazil, with the accession numbers and the vintage years.
Fig. 4

Nine seeds of cowpea (Vigna unguiculata).

1H NMR analysis

The NMR experiments were performed on an Agilent 600-MHz spectrometer equipped with a 5 mm (H-F/15N-31P) inverse detection One Probe™. The 1H NMR spectra were acquired under quantitative parameters using the PRESAT pulse sequence for water suppression, since this pulse sequence presented the best irradiation profile for quantitative determination of the signals near of the water suppression region [9]. The data were acquired with the RF pulse calibrated to 90° and 128 scans, 64 k of time domain points for a spectral window of 15 ppm, acquisition time of 6.7 s and a relaxation delay of 15.0 s. The temperature was 298 K. The spectra were processed by applying exponential Lorentzian broadening of 0.3 Hz and zero filling to 64k points before Fourier transformation. Phase correction was performed manually for each spectrum and the baseline correction was applied over the entire spectral range. All spectra were referenced to the TMSP-d4 resonance at 0.0 ppm.

Matrices from the 1H NMR data

Two matrices were used for chemometric evaluation: Table 3 for PCA (Principal Component Analysis); Table 4 for clustering analysis. For the construction of the Table 3, all the 1H NMR data were converted to American Standard Code for Information Interchange (ASCII) files and imported to Microsoft Excel software (Elenilson G. [2]). For the construction of the Table 4, each spectrum was divided into 0.04 ppm wide buckets, using simple rectangular bucket, sum of intensities in integration mode and scaled to total intensity in scaling process (Elenilson G. [1]).
Subject areaAnalytical chemistry
More specific subject area1H NMR combined with chemometrics and solid-state NMR
Type of dataTables and figures
How data was acquiredNMR spectrometer Agilent 600-MHz, 5 mm (H-F/15N-31P) One Probe™
Data formatRaw and analyzed
Experimental factorsSeeds were peeled and pulverized.
Liquid-state NMR analysis: 15 mg was soaked in 400 μL of D2O, 200 μL of phosphate buffer pH 4.3 and 1.0 mM of TMSP-d4;automatic mixed (5 min) at room temperature, centrifuged at 6000 rpm.
Solid-state NMR analysis: 50–55 mg were inserted in the Kel-F NMR rotor of 5 mm.
Experimental features1H NMR acquisition: PRESAT pulse sequence; 90° calibrated pulse; 128 scans, 64k of time domain points; spectral window of 15 ppm, acquisition time of 6.7 s; relaxation delay of 15.0 s; temperature of 298 K.
1H NMR data processing: Lorentzian broadening of 0.3 Hz, zero filling to 64k points.
Data source locationFortaleza-Ceará, Brazil, cowpea germplasm bank at Federal University of Ceará
Data accessibilityData was provided in the article and raw data was provided as.xls
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