| Literature DB >> 28217354 |
Alan R Kennedy1, Abedawn I Khalaf1, Fraser J Scott2, Colin J Suckling1.
Abstract
The title nitro-pyrrole-based compounds, C7H8N2O4, (I) (ethyl 4-nitro-1H-pyrrole-2-carboxyl-ate), its derivative C12H14N2O4, (II) [ethyl 4-nitro-1-(4-pent-yn-yl)-1H-pyrrole-2-carboxyl-ate], C15H26N4O3, (III) {N-[3-(di-methyamino)prop-yl]-1-isopentyl-4-nitro-1H-pyrrole-2-carboxamide}, and C20H27N9O5, (IV) {1-(3-azido-prop-yl)-4-(1-methyl-4-nitro-1H-pyrrole-2-carboxamido)-N-[2-(morpholin-4-yl)eth-yl]-1H-pyrrole-2-carboxamide}, are inter-mediates used in the synthesis of modified DNA minor-groove binders. In all four compounds, the nitro groups lie in the plane of the pyrrole ring. In compounds (I) and (II), the ester groups also lie in the plane of the pyrrole ring. In compound (III), both of the other substituents lie out of the plane of the pyrrole ring. In the case of compound (IV), the coplanarity extends to the second pyrrole ring and through both amide groups. In the crystals of all four compounds, layer-like structures are formed, via a combination of N-H⋯O and C-H⋯O hydrogen bonds for (I), (III) and (IV), but by only C-H⋯O hydrogen bonds for (II).Entities:
Keywords: crystal structure; hydrogen bonding; minor-groove binders; nitropyrrole
Year: 2017 PMID: 28217354 PMCID: PMC5290577 DOI: 10.1107/S2056989017001177
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of compound (I), with the atom labelling and 50% probability displacement ellipsoids.
Figure 2The molecular structure of compound (II), with the atom labelling and 50% probability displacement ellipsoids.
Figure 3The molecular structure of compound (III), with the atom labelling and 50% probability displacement ellipsoids.
Figure 4The molecular structure of compound (IV), with the atom labelling and 50% probability displacement ellipsoids.
Figure 5The crystal packing of compound (I), viewed along the c axis. The intermolecular interactions (See Table 1 ▸) are shown as dashed lines. For clarity, only the H atoms involved in these interactions have been included.
Hydrogen-bond geometry (Å, °) for (I)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N2—H1 | 0.90 (4) | 2.00 (5) | 2.872 (3) | 163 (4) |
| C1—H1⋯O1ii | 0.95 | 2.34 | 3.203 (4) | 151 |
Symmetry codes: (i) ; (ii) .
Hydrogen-bond geometry (Å, °) for (II)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C4—H4⋯O3i | 0.95 | 2.53 | 3.323 (2) | 141 |
| C10—H10 | 0.99 | 2.51 | 3.337 (2) | 141 |
| C12—H12⋯O4iii | 0.95 | 2.40 | 3.262 (2) | 151 |
Symmetry codes: (i) ; (ii) ; (iii) .
Figure 6The crystal packing of compound (II), viewed along the a axis. The intermolecular interactions (See Table 2 ▸) are shown as dashed lines. For clarity, only the H atoms involved in these interactions have been included.
Hydrogen-bond geometry (Å, °) for (III)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N3—H1 | 0.91 (1) | 2.01 (1) | 2.895 (2) | 165 (2) |
| C5—H5 | 0.99 | 2.54 | 3.460 (2) | 154 |
Symmetry codes: (i) ; (ii) .
Figure 7The crystal packing of compound (III), viewed along the a axis. The intermolecular interactions (See Table 3 ▸) are shown as dashed lines. For clarity, only the H atoms involved in these interactions have been included.
Hydrogen-bond geometry (Å, °) for (IV)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N2—H1 | 0.83 (2) | 2.36 (2) | 3.176 (2) | 171 (2) |
| N4—H2 | 0.88 (2) | 2.02 (2) | 2.864 (2) | 162 (2) |
| C2—H2 | 0.99 | 2.53 | 3.498 (3) | 165 |
| C6—H6 | 0.99 | 2.58 | 3.354 (3) | 135 |
| C9—H9⋯O5i | 0.95 | 2.43 | 3.322 (2) | 156 |
| C14—H14⋯O2ii | 0.95 | 2.46 | 3.317 (3) | 149 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .
Figure 8The crystal packing of compound (IV), viewed along the a axis. The intermolecular interactions (See Table 4 ▸) are shown as dashed lines. For clarity, only the H atoms involved in these interactions have been included.
Experimental details
| (I) | (II) | (III) | (IV) | |
|---|---|---|---|---|
| Crystal data | ||||
| Chemical formula | C7H8N2O4 | C12H14N2O4 | C15H26N4O3 | C20H27N9O5 |
|
| 184.15 | 250.25 | 310.40 | 473.51 |
| Crystal system, space group | Monoclinic, | Monoclinic, | Monoclinic, | Monoclinic, |
| Temperature (K) | 123 | 123 | 123 | 123 |
|
| 11.0318 (13), 10.4108 (13), 7.1659 (8) | 7.8839 (4), 16.1443 (7), 10.2058 (5) | 17.5744 (7), 11.3718 (6), 8.7299 (4) | 11.2809 (4), 16.4528 (6), 12.5130 (5) |
| β (°) | 96.734 (10) | 104.472 (5) | 92.076 (4) | 106.542 (4) |
|
| 817.32 (17) | 1257.78 (10) | 1743.55 (14) | 2226.32 (14) |
|
| 4 | 4 | 4 | 4 |
| Radiation type | Mo | Mo | Mo | Mo |
| μ (mm−1) | 0.13 | 0.10 | 0.08 | 0.11 |
| Crystal size (mm) | 0.35 × 0.25 × 0.02 | 0.38 × 0.14 × 0.06 | 0.40 × 0.30 × 0.04 | 0.30 × 0.28 × 0.03 |
| Data collection | ||||
| Diffractometer | Oxford Diffraction Xcalibur E | Oxford Diffraction Xcalibur E | Oxford Diffraction Xcalibur E | Oxford Diffraction Xcalibur E |
| Absorption correction | Multi-scan ( | Multi-scan ( | Multi-scan ( | Multi-scan ( |
|
| 0.679, 1.000 | 0.918, 1.000 | 0.995, 1.000 | 0.828, 1.000 |
| No. of measured, independent and observed [ | 4995, 1604, 1240 | 6098, 2745, 2133 | 8252, 3971, 2873 | 14949, 4852, 3295 |
|
| 0.038 | 0.025 | 0.030 | 0.038 |
| (sin θ/λ)max (Å−1) | 0.617 | 0.639 | 0.650 | 0.639 |
| Refinement | ||||
|
| 0.073, 0.210, 1.17 | 0.041, 0.100, 1.03 | 0.053, 0.145, 1.03 | 0.049, 0.128, 1.03 |
| No. of reflections | 1604 | 2745 | 3971 | 4852 |
| No. of parameters | 123 | 164 | 206 | 316 |
| No. of restraints | 0 | 0 | 1 | 0 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement | H-atom parameters constrained | H atoms treated by a mixture of independent and constrained refinement | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.73, −0.30 | 0.22, −0.24 | 0.33, −0.27 | 0.29, −0.32 |
Computer programs: CrysAlis PRO (Agilent, 2014 ▸), SIR92 (Altomare et al., 1994 ▸), SHELXL97 (Sheldrick, 2008 ▸) and Mercury (Macrae et al., 2008 ▸).
| C7H8N2O4 | |
| Monoclinic, | Mo |
| Cell parameters from 1975 reflections | |
| θ = 3.2–28.3° | |
| µ = 0.13 mm−1 | |
| β = 96.734 (10)° | |
| Plate, colourless | |
| 0.35 × 0.25 × 0.02 mm |
| Oxford Diffraction Xcalibur E diffractometer | 1604 independent reflections |
| Radiation source: fine-focus sealed tube | 1240 reflections with |
| Graphite monochromator | |
| ω scans | θmax = 26.0°, θmin = 3.5° |
| Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010) | |
| 4995 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1604 reflections | (Δ/σ)max = 0.001 |
| 123 parameters | Δρmax = 0.73 e Å−3 |
| 0 restraints | Δρmin = −0.30 e Å−3 |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| O1 | 0.6535 (2) | 0.5757 (2) | 0.6758 (3) | 0.0334 (7) | |
| O2 | 0.8216 (2) | 0.5067 (2) | 0.8325 (3) | 0.0321 (6) | |
| O3 | 0.6242 (2) | −0.0697 (2) | 0.6309 (3) | 0.0284 (6) | |
| O4 | 0.79942 (18) | −0.0218 (2) | 0.8128 (3) | 0.0225 (6) | |
| N1 | 0.7216 (2) | 0.4878 (3) | 0.7390 (3) | 0.0254 (7) | |
| N2 | 0.5700 (2) | 0.1948 (3) | 0.6026 (3) | 0.0211 (6) | |
| C1 | 0.5726 (3) | 0.3226 (3) | 0.6068 (4) | 0.0203 (7) | |
| H1 | 0.5102 | 0.3788 | 0.5530 | 0.024* | |
| C2 | 0.6831 (3) | 0.3584 (3) | 0.7041 (4) | 0.0189 (7) | |
| C3 | 0.7498 (3) | 0.2472 (3) | 0.7609 (4) | 0.0181 (7) | |
| H3 | 0.8287 | 0.2428 | 0.8300 | 0.022* | |
| C4 | 0.6769 (2) | 0.1465 (3) | 0.6954 (4) | 0.0179 (7) | |
| C5 | 0.6964 (3) | 0.0084 (3) | 0.7088 (4) | 0.0192 (7) | |
| C6 | 0.8251 (3) | −0.1596 (3) | 0.8261 (5) | 0.0290 (8) | |
| H6A | 0.8214 | −0.1978 | 0.6991 | 0.035* | |
| H6B | 0.7645 | −0.2034 | 0.8954 | 0.035* | |
| C7 | 0.9511 (3) | −0.1739 (4) | 0.9291 (5) | 0.0325 (9) | |
| H7A | 1.0100 | −0.1298 | 0.8592 | 0.049* | |
| H7B | 0.9720 | −0.2653 | 0.9406 | 0.049* | |
| H7C | 0.9533 | −0.1360 | 1.0546 | 0.049* | |
| H1N | 0.513 (4) | 0.143 (4) | 0.546 (6) | 0.055 (13)* |
| O1 | 0.0340 (14) | 0.0233 (14) | 0.0415 (14) | 0.0062 (10) | −0.0014 (10) | 0.0016 (10) |
| O2 | 0.0239 (12) | 0.0294 (14) | 0.0408 (13) | −0.0063 (10) | −0.0050 (10) | −0.0058 (10) |
| O3 | 0.0227 (12) | 0.0247 (13) | 0.0359 (13) | −0.0045 (10) | −0.0039 (9) | −0.0034 (10) |
| O4 | 0.0213 (11) | 0.0189 (12) | 0.0253 (11) | 0.0015 (9) | −0.0053 (8) | 0.0002 (9) |
| N1 | 0.0263 (14) | 0.0236 (15) | 0.0270 (14) | 0.0008 (12) | 0.0057 (11) | 0.0002 (11) |
| N2 | 0.0139 (12) | 0.0293 (16) | 0.0189 (12) | −0.0021 (11) | −0.0031 (9) | −0.0010 (11) |
| C1 | 0.0167 (14) | 0.0271 (18) | 0.0164 (14) | 0.0020 (13) | −0.0010 (11) | 0.0031 (12) |
| C2 | 0.0165 (14) | 0.0216 (17) | 0.0182 (14) | 0.0004 (12) | −0.0002 (11) | −0.0002 (12) |
| C3 | 0.0134 (14) | 0.0238 (17) | 0.0166 (13) | 0.0028 (11) | −0.0007 (11) | 0.0024 (11) |
| C4 | 0.0136 (13) | 0.0249 (17) | 0.0144 (13) | 0.0017 (12) | −0.0019 (10) | 0.0029 (12) |
| C5 | 0.0181 (14) | 0.0230 (17) | 0.0165 (13) | −0.0004 (13) | 0.0015 (11) | 0.0020 (12) |
| C6 | 0.0251 (17) | 0.0252 (18) | 0.0348 (18) | 0.0019 (14) | −0.0047 (13) | −0.0023 (14) |
| C7 | 0.0238 (17) | 0.033 (2) | 0.0397 (19) | 0.0033 (15) | −0.0013 (14) | 0.0006 (15) |
| O1—N1 | 1.236 (3) | C2—C3 | 1.406 (4) |
| O2—N1 | 1.237 (3) | C3—C4 | 1.371 (4) |
| O3—C5 | 1.225 (4) | C3—H3 | 0.9500 |
| O4—C5 | 1.322 (3) | C4—C5 | 1.455 (4) |
| O4—C6 | 1.464 (4) | C6—C7 | 1.502 (4) |
| N1—C2 | 1.426 (4) | C6—H6A | 0.9900 |
| N2—C1 | 1.331 (5) | C6—H6B | 0.9900 |
| N2—C4 | 1.380 (4) | C7—H7A | 0.9800 |
| N2—H1N | 0.90 (4) | C7—H7B | 0.9800 |
| C1—C2 | 1.383 (4) | C7—H7C | 0.9800 |
| C1—H1 | 0.9500 | ||
| C5—O4—C6 | 114.6 (2) | C3—C4—C5 | 131.1 (3) |
| O1—N1—O2 | 123.1 (3) | N2—C4—C5 | 120.3 (3) |
| O1—N1—C2 | 118.7 (3) | O3—C5—O4 | 124.7 (3) |
| O2—N1—C2 | 118.2 (3) | O3—C5—C4 | 122.8 (3) |
| C1—N2—C4 | 109.8 (2) | O4—C5—C4 | 112.5 (2) |
| C1—N2—H1N | 129 (3) | O4—C6—C7 | 106.9 (3) |
| C4—N2—H1N | 121 (3) | O4—C6—H6A | 110.3 |
| N2—C1—C2 | 107.2 (3) | C7—C6—H6A | 110.3 |
| N2—C1—H1 | 126.4 | O4—C6—H6B | 110.3 |
| C2—C1—H1 | 126.4 | C7—C6—H6B | 110.3 |
| C1—C2—C3 | 109.0 (3) | H6A—C6—H6B | 108.6 |
| C1—C2—N1 | 124.7 (3) | C6—C7—H7A | 109.5 |
| C3—C2—N1 | 126.3 (3) | C6—C7—H7B | 109.5 |
| C4—C3—C2 | 105.3 (3) | H7A—C7—H7B | 109.5 |
| C4—C3—H3 | 127.3 | C6—C7—H7C | 109.5 |
| C2—C3—H3 | 127.3 | H7A—C7—H7C | 109.5 |
| C3—C4—N2 | 108.7 (3) | H7B—C7—H7C | 109.5 |
| C4—N2—C1—C2 | 0.0 (3) | C2—C3—C4—C5 | 179.4 (3) |
| N2—C1—C2—C3 | 0.0 (3) | C1—N2—C4—C3 | 0.0 (3) |
| N2—C1—C2—N1 | 179.8 (3) | C1—N2—C4—C5 | −179.5 (2) |
| O1—N1—C2—C1 | −1.5 (4) | C6—O4—C5—O3 | 1.7 (4) |
| O2—N1—C2—C1 | 178.1 (3) | C6—O4—C5—C4 | −178.3 (2) |
| O1—N1—C2—C3 | 178.3 (3) | C3—C4—C5—O3 | −175.0 (3) |
| O2—N1—C2—C3 | −2.1 (4) | N2—C4—C5—O3 | 4.4 (4) |
| C1—C2—C3—C4 | 0.1 (3) | C3—C4—C5—O4 | 4.9 (4) |
| N1—C2—C3—C4 | −179.8 (3) | N2—C4—C5—O4 | −175.7 (2) |
| C2—C3—C4—N2 | −0.1 (3) | C5—O4—C6—C7 | 173.4 (3) |
| H··· | ||||
| N2—H1 | 0.90 (4) | 2.00 (5) | 2.872 (3) | 163 (4) |
| C1—H1···O1ii | 0.95 | 2.34 | 3.203 (4) | 151 |
| C12H14N2O4 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 2521 reflections |
| θ = 3.2–29.3° | |
| µ = 0.10 mm−1 | |
| β = 104.472 (5)° | Rod, colourless |
| 0.38 × 0.14 × 0.06 mm | |
| Oxford Diffraction Xcalibur E diffractometer | 2745 independent reflections |
| Radiation source: fine-focus sealed tube | 2133 reflections with |
| Graphite monochromator | |
| ω scans | θmax = 27.0°, θmin = 3.2° |
| Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010) | |
| 6098 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2745 reflections | (Δ/σ)max < 0.001 |
| 164 parameters | Δρmax = 0.22 e Å−3 |
| 0 restraints | Δρmin = −0.24 e Å−3 |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| O1 | 0.67236 (15) | −0.08852 (7) | 0.29527 (11) | 0.0320 (3) | |
| O2 | 0.66323 (13) | −0.10194 (6) | 0.51291 (11) | 0.0242 (3) | |
| O3 | 0.8949 (2) | 0.18072 (8) | 0.77978 (13) | 0.0489 (4) | |
| O4 | 1.00887 (15) | 0.25558 (7) | 0.64857 (12) | 0.0325 (3) | |
| N1 | 0.84828 (15) | 0.07104 (8) | 0.37170 (12) | 0.0192 (3) | |
| N2 | 0.93141 (17) | 0.19300 (8) | 0.67172 (14) | 0.0261 (3) | |
| C1 | 0.77664 (17) | 0.01969 (9) | 0.45352 (15) | 0.0190 (3) | |
| C2 | 0.79676 (18) | 0.05720 (9) | 0.57710 (15) | 0.0204 (3) | |
| H2 | 0.7608 | 0.0365 | 0.6530 | 0.024* | |
| C3 | 0.88142 (18) | 0.13247 (9) | 0.56798 (15) | 0.0203 (3) | |
| C4 | 0.91140 (18) | 0.13959 (9) | 0.44135 (15) | 0.0201 (3) | |
| H4 | 0.9667 | 0.1848 | 0.4091 | 0.024* | |
| C5 | 0.69928 (18) | −0.06124 (9) | 0.40866 (15) | 0.0210 (3) | |
| C6 | 0.5915 (2) | −0.18454 (9) | 0.48267 (17) | 0.0276 (4) | |
| H6A | 0.6748 | −0.2201 | 0.4501 | 0.033* | |
| H6B | 0.4800 | −0.1822 | 0.4117 | 0.033* | |
| C7 | 0.5610 (2) | −0.21857 (11) | 0.61188 (19) | 0.0391 (5) | |
| H7A | 0.6723 | −0.2205 | 0.6811 | 0.059* | |
| H7B | 0.5123 | −0.2746 | 0.5959 | 0.059* | |
| H7C | 0.4785 | −0.1828 | 0.6430 | 0.059* | |
| C8 | 0.86099 (19) | 0.05609 (10) | 0.23232 (15) | 0.0222 (3) | |
| H8A | 0.8812 | −0.0037 | 0.2205 | 0.027* | |
| H8B | 0.9626 | 0.0869 | 0.2164 | 0.027* | |
| C9 | 0.69648 (19) | 0.08289 (10) | 0.12910 (15) | 0.0237 (3) | |
| H9A | 0.6743 | 0.1423 | 0.1423 | 0.028* | |
| H9B | 0.5953 | 0.0509 | 0.1431 | 0.028* | |
| C10 | 0.7135 (2) | 0.06919 (10) | −0.01578 (16) | 0.0285 (4) | |
| H10A | 0.6022 | 0.0852 | −0.0801 | 0.034* | |
| H10B | 0.8069 | 0.1057 | −0.0323 | 0.034* | |
| C11 | 0.75444 (19) | −0.01676 (11) | −0.04200 (16) | 0.0285 (4) | |
| C12 | 0.7889 (2) | −0.08626 (12) | −0.0585 (2) | 0.0377 (4) | |
| H12 | 0.8167 | −0.1424 | −0.0718 | 0.045* |
| O1 | 0.0447 (7) | 0.0269 (6) | 0.0227 (6) | −0.0082 (5) | 0.0050 (5) | −0.0042 (5) |
| O2 | 0.0289 (5) | 0.0186 (5) | 0.0261 (6) | −0.0061 (4) | 0.0089 (5) | −0.0016 (5) |
| O3 | 0.0915 (11) | 0.0352 (8) | 0.0284 (7) | −0.0224 (7) | 0.0306 (7) | −0.0113 (6) |
| O4 | 0.0432 (7) | 0.0192 (6) | 0.0359 (7) | −0.0106 (5) | 0.0112 (5) | −0.0032 (5) |
| N1 | 0.0202 (6) | 0.0199 (6) | 0.0171 (7) | 0.0005 (5) | 0.0038 (5) | 0.0017 (5) |
| N2 | 0.0341 (7) | 0.0188 (7) | 0.0256 (8) | −0.0030 (6) | 0.0078 (6) | −0.0017 (6) |
| C1 | 0.0194 (7) | 0.0173 (7) | 0.0197 (8) | 0.0006 (6) | 0.0037 (6) | 0.0021 (6) |
| C2 | 0.0224 (7) | 0.0180 (7) | 0.0212 (8) | 0.0011 (6) | 0.0064 (6) | 0.0017 (6) |
| C3 | 0.0215 (7) | 0.0177 (7) | 0.0208 (8) | 0.0011 (6) | 0.0033 (6) | 0.0007 (6) |
| C4 | 0.0195 (7) | 0.0162 (7) | 0.0237 (8) | −0.0013 (6) | 0.0040 (6) | 0.0017 (6) |
| C5 | 0.0200 (7) | 0.0201 (8) | 0.0223 (8) | 0.0023 (6) | 0.0040 (6) | 0.0006 (6) |
| C6 | 0.0293 (8) | 0.0173 (8) | 0.0356 (10) | −0.0048 (6) | 0.0072 (7) | −0.0019 (7) |
| C7 | 0.0462 (10) | 0.0295 (10) | 0.0397 (11) | −0.0126 (8) | 0.0073 (8) | 0.0070 (8) |
| C8 | 0.0244 (7) | 0.0247 (8) | 0.0184 (8) | 0.0011 (6) | 0.0069 (6) | −0.0003 (6) |
| C9 | 0.0266 (7) | 0.0234 (8) | 0.0200 (8) | 0.0036 (6) | 0.0036 (6) | 0.0004 (6) |
| C10 | 0.0357 (9) | 0.0288 (9) | 0.0192 (8) | 0.0015 (7) | 0.0035 (7) | 0.0010 (7) |
| C11 | 0.0243 (8) | 0.0374 (10) | 0.0238 (9) | −0.0022 (7) | 0.0058 (6) | −0.0050 (7) |
| C12 | 0.0326 (9) | 0.0337 (10) | 0.0506 (12) | −0.0030 (8) | 0.0173 (8) | −0.0146 (9) |
| O1—C5 | 1.2064 (18) | C6—H6A | 0.9900 |
| O2—C5 | 1.3399 (18) | C6—H6B | 0.9900 |
| O2—C6 | 1.4512 (18) | C7—H7A | 0.9800 |
| O3—N2 | 1.2235 (17) | C7—H7B | 0.9800 |
| O4—N2 | 1.2336 (16) | C7—H7C | 0.9800 |
| N1—C4 | 1.3420 (19) | C8—C9 | 1.515 (2) |
| N1—C1 | 1.3926 (18) | C8—H8A | 0.9900 |
| N1—C8 | 1.4707 (18) | C8—H8B | 0.9900 |
| N2—C3 | 1.4221 (19) | C9—C10 | 1.534 (2) |
| C1—C2 | 1.372 (2) | C9—H9A | 0.9900 |
| C1—C5 | 1.466 (2) | C9—H9B | 0.9900 |
| C2—C3 | 1.401 (2) | C10—C11 | 1.464 (2) |
| C2—H2 | 0.9500 | C10—H10A | 0.9900 |
| C3—C4 | 1.376 (2) | C10—H10B | 0.9900 |
| C4—H4 | 0.9500 | C11—C12 | 1.177 (2) |
| C6—C7 | 1.502 (2) | C12—H12 | 0.9500 |
| C5—O2—C6 | 115.49 (12) | H6A—C6—H6B | 108.6 |
| C4—N1—C1 | 109.00 (12) | C6—C7—H7A | 109.5 |
| C4—N1—C8 | 122.81 (12) | C6—C7—H7B | 109.5 |
| C1—N1—C8 | 128.18 (12) | H7A—C7—H7B | 109.5 |
| O3—N2—O4 | 122.99 (13) | C6—C7—H7C | 109.5 |
| O3—N2—C3 | 118.42 (13) | H7A—C7—H7C | 109.5 |
| O4—N2—C3 | 118.59 (13) | H7B—C7—H7C | 109.5 |
| C2—C1—N1 | 108.50 (13) | N1—C8—C9 | 111.85 (11) |
| C2—C1—C5 | 128.60 (13) | N1—C8—H8A | 109.2 |
| N1—C1—C5 | 122.87 (13) | C9—C8—H8A | 109.2 |
| C1—C2—C3 | 105.63 (13) | N1—C8—H8B | 109.2 |
| C1—C2—H2 | 127.2 | C9—C8—H8B | 109.2 |
| C3—C2—H2 | 127.2 | H8A—C8—H8B | 107.9 |
| C4—C3—C2 | 109.36 (13) | C8—C9—C10 | 111.30 (12) |
| C4—C3—N2 | 124.15 (13) | C8—C9—H9A | 109.4 |
| C2—C3—N2 | 126.49 (14) | C10—C9—H9A | 109.4 |
| N1—C4—C3 | 107.50 (12) | C8—C9—H9B | 109.4 |
| N1—C4—H4 | 126.2 | C10—C9—H9B | 109.4 |
| C3—C4—H4 | 126.2 | H9A—C9—H9B | 108.0 |
| O1—C5—O2 | 124.15 (14) | C11—C10—C9 | 112.91 (13) |
| O1—C5—C1 | 125.78 (14) | C11—C10—H10A | 109.0 |
| O2—C5—C1 | 110.08 (13) | C9—C10—H10A | 109.0 |
| O2—C6—C7 | 106.78 (13) | C11—C10—H10B | 109.0 |
| O2—C6—H6A | 110.4 | C9—C10—H10B | 109.0 |
| C7—C6—H6A | 110.4 | H10A—C10—H10B | 107.8 |
| O2—C6—H6B | 110.4 | C12—C11—C10 | 177.77 (19) |
| C7—C6—H6B | 110.4 | C11—C12—H12 | 180.0 |
| C4—N1—C1—C2 | −0.32 (16) | C2—C3—C4—N1 | −0.11 (16) |
| C8—N1—C1—C2 | 178.42 (13) | N2—C3—C4—N1 | 179.47 (13) |
| C4—N1—C1—C5 | −178.80 (13) | C6—O2—C5—O1 | 1.6 (2) |
| C8—N1—C1—C5 | −0.1 (2) | C6—O2—C5—C1 | −177.89 (11) |
| N1—C1—C2—C3 | 0.25 (15) | C2—C1—C5—O1 | 173.80 (15) |
| C5—C1—C2—C3 | 178.61 (14) | N1—C1—C5—O1 | −8.1 (2) |
| C1—C2—C3—C4 | −0.09 (16) | C2—C1—C5—O2 | −6.8 (2) |
| C1—C2—C3—N2 | −179.65 (14) | N1—C1—C5—O2 | 171.39 (12) |
| O3—N2—C3—C4 | 178.63 (15) | C5—O2—C6—C7 | −179.97 (13) |
| O4—N2—C3—C4 | −1.1 (2) | C4—N1—C8—C9 | −95.21 (16) |
| O3—N2—C3—C2 | −1.9 (2) | C1—N1—C8—C9 | 86.21 (17) |
| O4—N2—C3—C2 | 178.43 (14) | N1—C8—C9—C10 | 178.43 (12) |
| C1—N1—C4—C3 | 0.26 (16) | C8—C9—C10—C11 | 56.43 (18) |
| C8—N1—C4—C3 | −178.56 (12) | C9—C10—C11—C12 | −16 (4) |
| H··· | ||||
| C4—H4···O3i | 0.95 | 2.53 | 3.323 (2) | 141 |
| C10—H10 | 0.99 | 2.51 | 3.337 (2) | 141 |
| C12—H12···O4iii | 0.95 | 2.40 | 3.262 (2) | 151 |
| C15H26N4O3 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 2708 reflections |
| θ = 3.2–28.8° | |
| µ = 0.08 mm−1 | |
| β = 92.076 (4)° | Plate, colourless |
| 0.40 × 0.30 × 0.04 mm | |
| Oxford Diffraction Xcalibur E diffractometer | 3971 independent reflections |
| Radiation source: fine-focus sealed tube | 2873 reflections with |
| Graphite monochromator | |
| ω scans | θmax = 27.5°, θmin = 3.2° |
| Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010) | |
| 8252 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3971 reflections | (Δ/σ)max < 0.001 |
| 206 parameters | Δρmax = 0.33 e Å−3 |
| 1 restraint | Δρmin = −0.27 e Å−3 |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| O1 | 0.43676 (7) | 1.01567 (12) | 0.38580 (15) | 0.0292 (3) | |
| O2 | 0.43689 (8) | 0.82473 (12) | 0.37406 (17) | 0.0343 (4) | |
| O3 | 0.67675 (7) | 0.84955 (11) | −0.16325 (14) | 0.0257 (3) | |
| N1 | 0.60351 (8) | 0.99423 (12) | 0.07012 (16) | 0.0183 (3) | |
| N2 | 0.46097 (8) | 0.92217 (13) | 0.33535 (17) | 0.0226 (3) | |
| N3 | 0.67714 (8) | 0.70166 (13) | 0.01195 (17) | 0.0200 (3) | |
| H1N | 0.6676 (11) | 0.6851 (17) | 0.1111 (12) | 0.024* | |
| N4 | 0.91585 (10) | 0.56415 (18) | 0.0944 (2) | 0.0422 (5) | |
| C1 | 0.55171 (9) | 1.02695 (15) | 0.1723 (2) | 0.0195 (4) | |
| H1 | 0.5396 | 1.1052 | 0.2008 | 0.023* | |
| C2 | 0.51972 (9) | 0.92543 (15) | 0.22736 (19) | 0.0187 (4) | |
| C3 | 0.55292 (9) | 0.82769 (15) | 0.15765 (19) | 0.0191 (4) | |
| H3 | 0.5412 | 0.7472 | 0.1738 | 0.023* | |
| C4 | 0.60561 (9) | 0.87244 (15) | 0.06166 (19) | 0.0174 (4) | |
| C5 | 0.65546 (10) | 1.07684 (15) | −0.0027 (2) | 0.0213 (4) | |
| H5A | 0.6340 | 1.1573 | 0.0008 | 0.026* | |
| H5B | 0.6606 | 1.0549 | −0.1116 | 0.026* | |
| C6 | 0.73347 (10) | 1.07512 (17) | 0.0790 (2) | 0.0244 (4) | |
| H6A | 0.7536 | 0.9939 | 0.0775 | 0.029* | |
| H6B | 0.7276 | 1.0976 | 0.1875 | 0.029* | |
| C7 | 0.79112 (11) | 1.15716 (18) | 0.0085 (2) | 0.0308 (5) | |
| H7 | 0.7960 | 1.1345 | −0.1014 | 0.037* | |
| C8 | 0.76633 (14) | 1.2851 (2) | 0.0139 (3) | 0.0456 (6) | |
| H8A | 0.7200 | 1.2957 | −0.0504 | 0.068* | |
| H8B | 0.8069 | 1.3352 | −0.0242 | 0.068* | |
| H8C | 0.7562 | 1.3068 | 0.1198 | 0.068* | |
| C9 | 0.86909 (13) | 1.1411 (3) | 0.0907 (3) | 0.0517 (7) | |
| H9A | 0.9071 | 1.1890 | 0.0398 | 0.078* | |
| H9B | 0.8839 | 1.0581 | 0.0869 | 0.078* | |
| H9C | 0.8661 | 1.1659 | 0.1978 | 0.078* | |
| C10 | 0.65675 (9) | 0.80817 (15) | −0.04016 (19) | 0.0185 (4) | |
| C11 | 0.71803 (10) | 0.61821 (16) | −0.0811 (2) | 0.0233 (4) | |
| H11A | 0.7028 | 0.6309 | −0.1901 | 0.028* | |
| H11B | 0.7023 | 0.5376 | −0.0534 | 0.028* | |
| C12 | 0.80398 (11) | 0.62648 (19) | −0.0639 (2) | 0.0303 (5) | |
| H12A | 0.8268 | 0.5728 | −0.1389 | 0.036* | |
| H12B | 0.8198 | 0.7076 | −0.0891 | 0.036* | |
| C13 | 0.83521 (11) | 0.59597 (19) | 0.0947 (2) | 0.0318 (5) | |
| H13A | 0.8286 | 0.6642 | 0.1634 | 0.038* | |
| H13B | 0.8059 | 0.5294 | 0.1355 | 0.038* | |
| C14 | 0.94033 (15) | 0.5120 (3) | 0.2399 (3) | 0.0619 (8) | |
| H14A | 0.9326 | 0.5684 | 0.3228 | 0.093* | |
| H14B | 0.9944 | 0.4916 | 0.2373 | 0.093* | |
| H14C | 0.9105 | 0.4408 | 0.2578 | 0.093* | |
| C15 | 0.96397 (14) | 0.6629 (3) | 0.0604 (4) | 0.0631 (8) | |
| H15A | 0.9505 | 0.6927 | −0.0424 | 0.095* | |
| H15B | 1.0174 | 0.6378 | 0.0645 | 0.095* | |
| H15C | 0.9567 | 0.7253 | 0.1359 | 0.095* |
| O1 | 0.0269 (7) | 0.0263 (7) | 0.0346 (8) | 0.0097 (6) | 0.0057 (6) | −0.0033 (6) |
| O2 | 0.0338 (7) | 0.0252 (8) | 0.0452 (9) | −0.0027 (6) | 0.0168 (6) | 0.0024 (6) |
| O3 | 0.0375 (7) | 0.0232 (7) | 0.0167 (6) | −0.0023 (6) | 0.0043 (5) | 0.0010 (5) |
| N1 | 0.0191 (7) | 0.0147 (7) | 0.0207 (7) | −0.0002 (6) | −0.0014 (5) | 0.0014 (6) |
| N2 | 0.0192 (7) | 0.0228 (8) | 0.0260 (8) | 0.0025 (6) | 0.0024 (6) | 0.0007 (6) |
| N3 | 0.0244 (7) | 0.0187 (7) | 0.0173 (7) | 0.0031 (6) | 0.0043 (6) | 0.0003 (6) |
| N4 | 0.0286 (9) | 0.0492 (12) | 0.0484 (12) | −0.0016 (8) | −0.0035 (8) | 0.0092 (9) |
| C1 | 0.0184 (8) | 0.0180 (9) | 0.0219 (9) | 0.0033 (7) | −0.0015 (6) | −0.0014 (7) |
| C2 | 0.0158 (7) | 0.0198 (9) | 0.0205 (8) | 0.0023 (7) | −0.0003 (6) | 0.0008 (7) |
| C3 | 0.0183 (8) | 0.0174 (9) | 0.0213 (9) | 0.0002 (7) | −0.0013 (6) | 0.0004 (7) |
| C4 | 0.0191 (8) | 0.0158 (8) | 0.0171 (8) | −0.0001 (7) | −0.0022 (6) | 0.0004 (6) |
| C5 | 0.0265 (9) | 0.0162 (8) | 0.0211 (9) | −0.0021 (7) | 0.0011 (7) | 0.0033 (7) |
| C6 | 0.0256 (9) | 0.0240 (10) | 0.0235 (9) | −0.0056 (8) | −0.0015 (7) | 0.0044 (8) |
| C7 | 0.0317 (10) | 0.0356 (11) | 0.0253 (10) | −0.0127 (9) | 0.0031 (8) | 0.0041 (9) |
| C8 | 0.0592 (15) | 0.0333 (12) | 0.0448 (14) | −0.0203 (11) | 0.0108 (11) | 0.0026 (10) |
| C9 | 0.0332 (12) | 0.0749 (19) | 0.0469 (14) | −0.0221 (12) | −0.0010 (10) | 0.0124 (13) |
| C10 | 0.0171 (8) | 0.0205 (9) | 0.0177 (8) | −0.0029 (7) | −0.0020 (6) | −0.0020 (7) |
| C11 | 0.0260 (9) | 0.0221 (9) | 0.0219 (9) | 0.0049 (7) | 0.0019 (7) | −0.0042 (7) |
| C12 | 0.0287 (10) | 0.0318 (11) | 0.0307 (11) | 0.0028 (8) | 0.0056 (8) | −0.0027 (8) |
| C13 | 0.0281 (10) | 0.0359 (11) | 0.0314 (11) | −0.0020 (9) | 0.0011 (8) | −0.0004 (9) |
| C14 | 0.0435 (14) | 0.076 (2) | 0.0645 (18) | −0.0022 (14) | −0.0170 (13) | 0.0193 (15) |
| C15 | 0.0366 (13) | 0.074 (2) | 0.079 (2) | −0.0156 (13) | −0.0038 (13) | 0.0177 (16) |
| O1—N2 | 1.2325 (19) | C6—H6B | 0.9900 |
| O2—N2 | 1.2375 (19) | C7—C8 | 1.520 (3) |
| O3—C10 | 1.236 (2) | C7—C9 | 1.535 (3) |
| N1—C1 | 1.350 (2) | C7—H7 | 1.0000 |
| N1—C4 | 1.388 (2) | C8—H8A | 0.9800 |
| N1—C5 | 1.471 (2) | C8—H8B | 0.9800 |
| N2—C2 | 1.424 (2) | C8—H8C | 0.9800 |
| N3—C10 | 1.338 (2) | C9—H9A | 0.9800 |
| N3—C11 | 1.456 (2) | C9—H9B | 0.9800 |
| N3—H1N | 0.908 (9) | C9—H9C | 0.9800 |
| N4—C15 | 1.443 (3) | C11—C12 | 1.515 (3) |
| N4—C14 | 1.453 (3) | C11—H11A | 0.9900 |
| N4—C13 | 1.463 (3) | C11—H11B | 0.9900 |
| C1—C2 | 1.378 (2) | C12—C13 | 1.511 (3) |
| C1—H1 | 0.9500 | C12—H12A | 0.9900 |
| C2—C3 | 1.404 (2) | C12—H12B | 0.9900 |
| C3—C4 | 1.369 (2) | C13—H13A | 0.9900 |
| C3—H3 | 0.9500 | C13—H13B | 0.9900 |
| C4—C10 | 1.480 (2) | C14—H14A | 0.9800 |
| C5—C6 | 1.523 (2) | C14—H14B | 0.9800 |
| C5—H5A | 0.9900 | C14—H14C | 0.9800 |
| C5—H5B | 0.9900 | C15—H15A | 0.9800 |
| C6—C7 | 1.524 (2) | C15—H15B | 0.9800 |
| C6—H6A | 0.9900 | C15—H15C | 0.9800 |
| C1—N1—C4 | 109.28 (14) | H8A—C8—H8B | 109.5 |
| C1—N1—C5 | 123.63 (14) | C7—C8—H8C | 109.5 |
| C4—N1—C5 | 126.63 (14) | H8A—C8—H8C | 109.5 |
| O1—N2—O2 | 123.30 (15) | H8B—C8—H8C | 109.5 |
| O1—N2—C2 | 118.82 (15) | C7—C9—H9A | 109.5 |
| O2—N2—C2 | 117.88 (15) | C7—C9—H9B | 109.5 |
| C10—N3—C11 | 122.14 (15) | H9A—C9—H9B | 109.5 |
| C10—N3—H1N | 117.1 (13) | C7—C9—H9C | 109.5 |
| C11—N3—H1N | 120.6 (13) | H9A—C9—H9C | 109.5 |
| C15—N4—C14 | 109.9 (2) | H9B—C9—H9C | 109.5 |
| C15—N4—C13 | 112.51 (19) | O3—C10—N3 | 124.00 (16) |
| C14—N4—C13 | 110.86 (19) | O3—C10—C4 | 122.17 (16) |
| N1—C1—C2 | 107.04 (15) | N3—C10—C4 | 113.82 (15) |
| N1—C1—H1 | 126.5 | N3—C11—C12 | 114.51 (15) |
| C2—C1—H1 | 126.5 | N3—C11—H11A | 108.6 |
| C1—C2—C3 | 109.31 (15) | C12—C11—H11A | 108.6 |
| C1—C2—N2 | 124.59 (15) | N3—C11—H11B | 108.6 |
| C3—C2—N2 | 126.09 (15) | C12—C11—H11B | 108.6 |
| C4—C3—C2 | 105.77 (15) | H11A—C11—H11B | 107.6 |
| C4—C3—H3 | 127.1 | C13—C12—C11 | 113.83 (16) |
| C2—C3—H3 | 127.1 | C13—C12—H12A | 108.8 |
| C3—C4—N1 | 108.58 (15) | C11—C12—H12A | 108.8 |
| C3—C4—C10 | 128.54 (16) | C13—C12—H12B | 108.8 |
| N1—C4—C10 | 122.87 (15) | C11—C12—H12B | 108.8 |
| N1—C5—C6 | 110.60 (14) | H12A—C12—H12B | 107.7 |
| N1—C5—H5A | 109.5 | N4—C13—C12 | 112.04 (17) |
| C6—C5—H5A | 109.5 | N4—C13—H13A | 109.2 |
| N1—C5—H5B | 109.5 | C12—C13—H13A | 109.2 |
| C6—C5—H5B | 109.5 | N4—C13—H13B | 109.2 |
| H5A—C5—H5B | 108.1 | C12—C13—H13B | 109.2 |
| C5—C6—C7 | 113.79 (15) | H13A—C13—H13B | 107.9 |
| C5—C6—H6A | 108.8 | N4—C14—H14A | 109.5 |
| C7—C6—H6A | 108.8 | N4—C14—H14B | 109.5 |
| C5—C6—H6B | 108.8 | H14A—C14—H14B | 109.5 |
| C7—C6—H6B | 108.8 | N4—C14—H14C | 109.5 |
| H6A—C6—H6B | 107.7 | H14A—C14—H14C | 109.5 |
| C8—C7—C6 | 112.21 (17) | H14B—C14—H14C | 109.5 |
| C8—C7—C9 | 110.58 (19) | N4—C15—H15A | 109.5 |
| C6—C7—C9 | 109.48 (17) | N4—C15—H15B | 109.5 |
| C8—C7—H7 | 108.1 | H15A—C15—H15B | 109.5 |
| C6—C7—H7 | 108.1 | N4—C15—H15C | 109.5 |
| C9—C7—H7 | 108.1 | H15A—C15—H15C | 109.5 |
| C7—C8—H8A | 109.5 | H15B—C15—H15C | 109.5 |
| C7—C8—H8B | 109.5 | ||
| C4—N1—C1—C2 | −0.96 (18) | C1—N1—C5—C6 | 98.60 (19) |
| C5—N1—C1—C2 | −173.61 (14) | C4—N1—C5—C6 | −72.7 (2) |
| N1—C1—C2—C3 | 0.21 (18) | N1—C5—C6—C7 | 179.02 (15) |
| N1—C1—C2—N2 | −178.42 (15) | C5—C6—C7—C8 | 61.5 (2) |
| O1—N2—C2—C1 | −0.8 (2) | C5—C6—C7—C9 | −175.33 (18) |
| O2—N2—C2—C1 | 179.34 (15) | C11—N3—C10—O3 | −7.4 (3) |
| O1—N2—C2—C3 | −179.22 (15) | C11—N3—C10—C4 | 171.01 (14) |
| O2—N2—C2—C3 | 0.9 (3) | C3—C4—C10—O3 | 148.08 (18) |
| C1—C2—C3—C4 | 0.63 (18) | N1—C4—C10—O3 | −30.3 (2) |
| N2—C2—C3—C4 | 179.23 (15) | C3—C4—C10—N3 | −30.4 (2) |
| C2—C3—C4—N1 | −1.20 (18) | N1—C4—C10—N3 | 151.23 (15) |
| C2—C3—C4—C10 | −179.77 (15) | C10—N3—C11—C12 | 90.8 (2) |
| C1—N1—C4—C3 | 1.39 (18) | N3—C11—C12—C13 | 64.5 (2) |
| C5—N1—C4—C3 | 173.75 (15) | C15—N4—C13—C12 | 68.4 (3) |
| C1—N1—C4—C10 | −179.95 (14) | C14—N4—C13—C12 | −168.0 (2) |
| C5—N1—C4—C10 | −7.6 (2) | C11—C12—C13—N4 | 159.69 (17) |
| H··· | ||||
| N3—H1 | 0.91 (1) | 2.01 (1) | 2.895 (2) | 165 (2) |
| C5—H5 | 0.99 | 2.54 | 3.460 (2) | 154 |
| C20H27N9O5 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 4332 reflections |
| θ = 3.3–29.5° | |
| µ = 0.11 mm−1 | |
| β = 106.542 (4)° | Plate, colourless |
| 0.30 × 0.28 × 0.03 mm | |
| Oxford Diffraction Xcalibur E diffractometer | 4852 independent reflections |
| Radiation source: fine-focus sealed tube | 3295 reflections with |
| Graphite monochromator | |
| ω scans | θmax = 27.0°, θmin = 3.3° |
| Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010) | |
| 14949 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 4852 reflections | (Δ/σ)max < 0.001 |
| 316 parameters | Δρmax = 0.29 e Å−3 |
| 0 restraints | Δρmin = −0.32 e Å−3 |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| O1 | 1.41300 (15) | 0.56045 (11) | 1.22578 (13) | 0.0398 (4) | |
| O2 | 0.98973 (13) | 0.34257 (9) | 0.69343 (11) | 0.0258 (3) | |
| O3 | 0.74904 (13) | −0.00393 (9) | 0.86469 (11) | 0.0283 (4) | |
| O4 | 0.97289 (14) | −0.07180 (11) | 1.39704 (12) | 0.0368 (4) | |
| O5 | 0.86665 (15) | −0.18352 (10) | 1.36804 (12) | 0.0340 (4) | |
| N1 | 1.30194 (15) | 0.45013 (11) | 1.04738 (14) | 0.0241 (4) | |
| N2 | 1.09195 (16) | 0.35509 (11) | 0.87526 (14) | 0.0246 (4) | |
| N3 | 0.84913 (15) | 0.20896 (10) | 0.74083 (13) | 0.0200 (4) | |
| N4 | 0.88041 (15) | 0.08236 (11) | 0.98173 (14) | 0.0198 (4) | |
| N5 | 0.76427 (15) | −0.11643 (11) | 1.04131 (13) | 0.0212 (4) | |
| N6 | 0.90337 (16) | −0.12010 (12) | 1.33493 (14) | 0.0261 (4) | |
| N7 | 0.53925 (18) | 0.24820 (15) | 0.46339 (15) | 0.0422 (6) | |
| N8 | 0.49433 (18) | 0.24723 (13) | 0.36178 (16) | 0.0379 (5) | |
| N9 | 0.4479 (2) | 0.24057 (16) | 0.26908 (19) | 0.0575 (7) | |
| C1 | 1.2953 (2) | 0.57601 (15) | 1.14934 (18) | 0.0345 (6) | |
| H1A | 1.2826 | 0.6354 | 1.1404 | 0.041* | |
| H1B | 1.2299 | 0.5537 | 1.1795 | 0.041* | |
| C2 | 1.2846 (2) | 0.53840 (13) | 1.03754 (17) | 0.0272 (5) | |
| H2A | 1.2020 | 0.5506 | 0.9861 | 0.033* | |
| H2B | 1.3476 | 0.5623 | 1.0058 | 0.033* | |
| C3 | 1.42227 (19) | 0.43408 (15) | 1.12873 (18) | 0.0312 (5) | |
| H3A | 1.4892 | 0.4540 | 1.0987 | 0.037* | |
| H3B | 1.4331 | 0.3747 | 1.1406 | 0.037* | |
| C4 | 1.4324 (2) | 0.47497 (16) | 1.23829 (19) | 0.0373 (6) | |
| H4A | 1.3704 | 0.4513 | 1.2716 | 0.045* | |
| H4B | 1.5154 | 0.4645 | 1.2899 | 0.045* | |
| C5 | 1.30008 (19) | 0.41485 (14) | 0.93966 (17) | 0.0271 (5) | |
| H5A | 1.3284 | 0.3577 | 0.9515 | 0.032* | |
| H5B | 1.3598 | 0.4447 | 0.9097 | 0.032* | |
| C6 | 1.1751 (2) | 0.41652 (14) | 0.85378 (17) | 0.0280 (5) | |
| H6A | 1.1376 | 0.4709 | 0.8539 | 0.034* | |
| H6B | 1.1860 | 0.4073 | 0.7789 | 0.034* | |
| C7 | 1.00628 (18) | 0.32014 (12) | 0.79114 (15) | 0.0194 (4) | |
| C8 | 0.93886 (17) | 0.25098 (12) | 0.81991 (15) | 0.0180 (4) | |
| C9 | 0.96041 (17) | 0.20919 (12) | 0.91950 (15) | 0.0187 (4) | |
| H9 | 1.0175 | 0.2240 | 0.9885 | 0.022* | |
| C10 | 0.88249 (17) | 0.14092 (12) | 0.90005 (15) | 0.0178 (4) | |
| C11 | 0.81442 (18) | 0.14275 (13) | 0.78955 (15) | 0.0212 (4) | |
| H11 | 0.7534 | 0.1042 | 0.7535 | 0.025* | |
| C12 | 0.81419 (17) | 0.01299 (13) | 0.95888 (15) | 0.0191 (4) | |
| C13 | 0.82387 (17) | −0.04175 (12) | 1.05467 (16) | 0.0196 (4) | |
| C14 | 0.88497 (18) | −0.03205 (13) | 1.16576 (16) | 0.0211 (4) | |
| H14 | 0.9339 | 0.0131 | 1.1995 | 0.025* | |
| C15 | 0.86064 (18) | −0.10201 (13) | 1.21902 (15) | 0.0209 (4) | |
| C16 | 0.78689 (18) | −0.15307 (13) | 1.14111 (16) | 0.0226 (4) | |
| H16 | 0.7573 | −0.2049 | 1.1552 | 0.027* | |
| C17 | 0.6959 (2) | −0.15598 (14) | 0.93648 (17) | 0.0296 (5) | |
| H17A | 0.6654 | −0.2090 | 0.9529 | 0.044* | |
| H17B | 0.7509 | −0.1636 | 0.8892 | 0.044* | |
| H17C | 0.6258 | −0.1218 | 0.8975 | 0.044* | |
| C18 | 0.78428 (19) | 0.23250 (13) | 0.62593 (15) | 0.0233 (5) | |
| H18A | 0.7383 | 0.1850 | 0.5861 | 0.028* | |
| H18B | 0.8458 | 0.2488 | 0.5872 | 0.028* | |
| C19 | 0.69467 (19) | 0.30212 (14) | 0.62105 (16) | 0.0266 (5) | |
| H19A | 0.6400 | 0.2886 | 0.6679 | 0.032* | |
| H19B | 0.7419 | 0.3515 | 0.6524 | 0.032* | |
| C20 | 0.6165 (2) | 0.31976 (15) | 0.50420 (18) | 0.0321 (5) | |
| H20A | 0.5637 | 0.3679 | 0.5039 | 0.039* | |
| H20B | 0.6699 | 0.3312 | 0.4555 | 0.039* | |
| H1N | 1.094 (2) | 0.3458 (14) | 0.9407 (19) | 0.025 (6)* | |
| H2N | 0.922 (2) | 0.0947 (15) | 1.051 (2) | 0.035 (7)* |
| O1 | 0.0397 (9) | 0.0420 (11) | 0.0339 (9) | −0.0102 (9) | 0.0042 (7) | −0.0090 (8) |
| O2 | 0.0354 (8) | 0.0221 (8) | 0.0175 (7) | −0.0041 (7) | 0.0036 (6) | 0.0044 (6) |
| O3 | 0.0364 (8) | 0.0263 (8) | 0.0184 (8) | −0.0069 (7) | 0.0017 (6) | 0.0004 (6) |
| O4 | 0.0357 (9) | 0.0497 (11) | 0.0211 (8) | −0.0107 (9) | 0.0021 (7) | 0.0016 (8) |
| O5 | 0.0510 (10) | 0.0254 (9) | 0.0273 (8) | 0.0052 (8) | 0.0139 (7) | 0.0106 (7) |
| N1 | 0.0229 (8) | 0.0221 (10) | 0.0252 (9) | −0.0034 (8) | 0.0037 (7) | 0.0000 (8) |
| N2 | 0.0331 (10) | 0.0261 (10) | 0.0145 (9) | −0.0090 (9) | 0.0067 (7) | −0.0014 (8) |
| N3 | 0.0263 (9) | 0.0180 (9) | 0.0140 (8) | −0.0012 (8) | 0.0030 (7) | 0.0003 (7) |
| N4 | 0.0260 (9) | 0.0178 (9) | 0.0146 (9) | −0.0011 (8) | 0.0045 (7) | 0.0013 (7) |
| N5 | 0.0253 (8) | 0.0180 (9) | 0.0203 (9) | −0.0001 (8) | 0.0067 (7) | 0.0005 (7) |
| N6 | 0.0280 (9) | 0.0294 (11) | 0.0215 (9) | 0.0081 (9) | 0.0081 (8) | 0.0067 (8) |
| N7 | 0.0405 (11) | 0.0530 (15) | 0.0259 (11) | −0.0132 (11) | −0.0019 (9) | 0.0015 (10) |
| N8 | 0.0345 (10) | 0.0428 (13) | 0.0322 (12) | 0.0017 (10) | 0.0028 (9) | −0.0026 (10) |
| N9 | 0.0693 (16) | 0.0580 (17) | 0.0339 (13) | 0.0029 (14) | −0.0036 (12) | −0.0083 (11) |
| C1 | 0.0374 (12) | 0.0333 (14) | 0.0329 (13) | −0.0019 (12) | 0.0098 (10) | −0.0066 (10) |
| C2 | 0.0289 (11) | 0.0217 (12) | 0.0307 (12) | −0.0011 (10) | 0.0078 (9) | −0.0010 (9) |
| C3 | 0.0237 (10) | 0.0291 (13) | 0.0367 (13) | −0.0033 (10) | 0.0018 (9) | 0.0059 (10) |
| C4 | 0.0312 (12) | 0.0444 (16) | 0.0306 (13) | −0.0089 (12) | −0.0003 (10) | 0.0073 (11) |
| C5 | 0.0280 (11) | 0.0218 (11) | 0.0320 (12) | −0.0047 (10) | 0.0095 (9) | −0.0034 (9) |
| C6 | 0.0358 (12) | 0.0243 (12) | 0.0238 (11) | −0.0107 (10) | 0.0082 (9) | −0.0011 (9) |
| C7 | 0.0233 (9) | 0.0172 (10) | 0.0182 (10) | 0.0024 (9) | 0.0069 (8) | −0.0012 (8) |
| C8 | 0.0220 (9) | 0.0154 (10) | 0.0162 (9) | 0.0020 (9) | 0.0047 (7) | −0.0035 (8) |
| C9 | 0.0209 (9) | 0.0190 (10) | 0.0161 (9) | 0.0016 (9) | 0.0053 (8) | −0.0022 (8) |
| C10 | 0.0220 (9) | 0.0160 (10) | 0.0157 (9) | 0.0022 (8) | 0.0057 (8) | 0.0013 (8) |
| C11 | 0.0256 (10) | 0.0178 (11) | 0.0192 (10) | −0.0026 (9) | 0.0048 (8) | 0.0000 (8) |
| C12 | 0.0213 (9) | 0.0188 (10) | 0.0181 (10) | 0.0023 (9) | 0.0071 (8) | −0.0005 (8) |
| C13 | 0.0209 (9) | 0.0190 (11) | 0.0199 (10) | 0.0026 (9) | 0.0074 (8) | 0.0006 (8) |
| C14 | 0.0235 (10) | 0.0213 (11) | 0.0188 (10) | 0.0016 (9) | 0.0064 (8) | 0.0000 (8) |
| C15 | 0.0228 (10) | 0.0224 (11) | 0.0185 (10) | 0.0041 (9) | 0.0072 (8) | 0.0027 (8) |
| C16 | 0.0280 (10) | 0.0179 (11) | 0.0245 (11) | 0.0032 (9) | 0.0118 (9) | 0.0054 (8) |
| C17 | 0.0386 (12) | 0.0230 (12) | 0.0248 (11) | −0.0068 (11) | 0.0052 (9) | −0.0013 (9) |
| C18 | 0.0300 (11) | 0.0234 (11) | 0.0133 (10) | −0.0020 (10) | 0.0009 (8) | −0.0001 (8) |
| C19 | 0.0264 (10) | 0.0290 (13) | 0.0230 (11) | 0.0014 (10) | 0.0045 (9) | 0.0013 (9) |
| C20 | 0.0266 (11) | 0.0348 (14) | 0.0312 (12) | −0.0027 (11) | 0.0023 (9) | 0.0072 (10) |
| O1—C1 | 1.421 (3) | C3—H3B | 0.9900 |
| O1—C4 | 1.425 (3) | C4—H4A | 0.9900 |
| O2—C7 | 1.239 (2) | C4—H4B | 0.9900 |
| O3—C12 | 1.230 (2) | C5—C6 | 1.510 (3) |
| O4—N6 | 1.226 (2) | C5—H5A | 0.9900 |
| O5—N6 | 1.237 (2) | C5—H5B | 0.9900 |
| N1—C5 | 1.462 (3) | C6—H6A | 0.9900 |
| N1—C2 | 1.466 (3) | C6—H6B | 0.9900 |
| N1—C3 | 1.470 (3) | C7—C8 | 1.469 (3) |
| N2—C7 | 1.339 (3) | C8—C9 | 1.383 (3) |
| N2—C6 | 1.455 (3) | C9—C10 | 1.404 (3) |
| N2—H1N | 0.83 (2) | C9—H9 | 0.9500 |
| N3—C11 | 1.359 (3) | C10—C11 | 1.378 (3) |
| N3—C8 | 1.383 (2) | C11—H11 | 0.9500 |
| N3—C18 | 1.467 (2) | C12—C13 | 1.478 (3) |
| N4—C12 | 1.349 (3) | C13—C14 | 1.374 (3) |
| N4—C10 | 1.410 (2) | C14—C15 | 1.396 (3) |
| N4—H2N | 0.88 (2) | C14—H14 | 0.9500 |
| N5—C16 | 1.344 (2) | C15—C16 | 1.374 (3) |
| N5—C13 | 1.388 (3) | C16—H16 | 0.9500 |
| N5—C17 | 1.471 (3) | C17—H17A | 0.9800 |
| N6—C15 | 1.424 (2) | C17—H17B | 0.9800 |
| N7—N8 | 1.227 (3) | C17—H17C | 0.9800 |
| N7—C20 | 1.467 (3) | C18—C19 | 1.517 (3) |
| N8—N9 | 1.134 (3) | C18—H18A | 0.9900 |
| C1—C2 | 1.503 (3) | C18—H18B | 0.9900 |
| C1—H1A | 0.9900 | C19—C20 | 1.505 (3) |
| C1—H1B | 0.9900 | C19—H19A | 0.9900 |
| C2—H2A | 0.9900 | C19—H19B | 0.9900 |
| C2—H2B | 0.9900 | C20—H20A | 0.9900 |
| C3—C4 | 1.502 (3) | C20—H20B | 0.9900 |
| C3—H3A | 0.9900 | ||
| C1—O1—C4 | 109.65 (18) | H6A—C6—H6B | 107.9 |
| C5—N1—C2 | 110.46 (17) | O2—C7—N2 | 121.32 (19) |
| C5—N1—C3 | 109.57 (17) | O2—C7—C8 | 121.96 (17) |
| C2—N1—C3 | 108.13 (17) | N2—C7—C8 | 116.62 (16) |
| C7—N2—C6 | 120.80 (17) | N3—C8—C9 | 107.54 (17) |
| C7—N2—H1N | 120.7 (16) | N3—C8—C7 | 122.45 (16) |
| C6—N2—H1N | 118.2 (16) | C9—C8—C7 | 129.45 (17) |
| C11—N3—C8 | 109.00 (16) | C8—C9—C10 | 107.51 (17) |
| C11—N3—C18 | 121.61 (16) | C8—C9—H9 | 126.2 |
| C8—N3—C18 | 128.93 (17) | C10—C9—H9 | 126.2 |
| C12—N4—C10 | 123.17 (17) | C11—C10—C9 | 107.40 (17) |
| C12—N4—H2N | 120.6 (16) | C11—C10—N4 | 128.53 (18) |
| C10—N4—H2N | 116.1 (16) | C9—C10—N4 | 124.06 (17) |
| C16—N5—C13 | 109.14 (17) | N3—C11—C10 | 108.55 (17) |
| C16—N5—C17 | 122.87 (18) | N3—C11—H11 | 125.7 |
| C13—N5—C17 | 127.76 (17) | C10—C11—H11 | 125.7 |
| O4—N6—O5 | 123.31 (17) | O3—C12—N4 | 122.55 (18) |
| O4—N6—C15 | 118.70 (18) | O3—C12—C13 | 121.67 (19) |
| O5—N6—C15 | 117.98 (18) | N4—C12—C13 | 115.78 (17) |
| N8—N7—C20 | 113.6 (2) | C14—C13—N5 | 108.13 (17) |
| N9—N8—N7 | 174.3 (3) | C14—C13—C12 | 130.51 (19) |
| O1—C1—C2 | 111.39 (19) | N5—C13—C12 | 121.36 (17) |
| O1—C1—H1A | 109.3 | C13—C14—C15 | 106.08 (18) |
| C2—C1—H1A | 109.3 | C13—C14—H14 | 127.0 |
| O1—C1—H1B | 109.3 | C15—C14—H14 | 127.0 |
| C2—C1—H1B | 109.3 | C16—C15—C14 | 109.09 (17) |
| H1A—C1—H1B | 108.0 | C16—C15—N6 | 123.80 (19) |
| N1—C2—C1 | 110.88 (18) | C14—C15—N6 | 127.11 (19) |
| N1—C2—H2A | 109.5 | N5—C16—C15 | 107.55 (19) |
| C1—C2—H2A | 109.5 | N5—C16—H16 | 126.2 |
| N1—C2—H2B | 109.5 | C15—C16—H16 | 126.2 |
| C1—C2—H2B | 109.5 | N5—C17—H17A | 109.5 |
| H2A—C2—H2B | 108.1 | N5—C17—H17B | 109.5 |
| N1—C3—C4 | 111.51 (19) | H17A—C17—H17B | 109.5 |
| N1—C3—H3A | 109.3 | N5—C17—H17C | 109.5 |
| C4—C3—H3A | 109.3 | H17A—C17—H17C | 109.5 |
| N1—C3—H3B | 109.3 | H17B—C17—H17C | 109.5 |
| C4—C3—H3B | 109.3 | N3—C18—C19 | 112.29 (16) |
| H3A—C3—H3B | 108.0 | N3—C18—H18A | 109.1 |
| O1—C4—C3 | 111.86 (19) | C19—C18—H18A | 109.1 |
| O1—C4—H4A | 109.2 | N3—C18—H18B | 109.1 |
| C3—C4—H4A | 109.2 | C19—C18—H18B | 109.1 |
| O1—C4—H4B | 109.2 | H18A—C18—H18B | 107.9 |
| C3—C4—H4B | 109.2 | C20—C19—C18 | 112.59 (18) |
| H4A—C4—H4B | 107.9 | C20—C19—H19A | 109.1 |
| N1—C5—C6 | 114.48 (18) | C18—C19—H19A | 109.1 |
| N1—C5—H5A | 108.6 | C20—C19—H19B | 109.1 |
| C6—C5—H5A | 108.6 | C18—C19—H19B | 109.1 |
| N1—C5—H5B | 108.6 | H19A—C19—H19B | 107.8 |
| C6—C5—H5B | 108.6 | N7—C20—C19 | 108.00 (19) |
| H5A—C5—H5B | 107.6 | N7—C20—H20A | 110.1 |
| N2—C6—C5 | 112.10 (18) | C19—C20—H20A | 110.1 |
| N2—C6—H6A | 109.2 | N7—C20—H20B | 110.1 |
| C5—C6—H6A | 109.2 | C19—C20—H20B | 110.1 |
| N2—C6—H6B | 109.2 | H20A—C20—H20B | 108.4 |
| C5—C6—H6B | 109.2 | ||
| C20—N7—N8—N9 | −177 (3) | C18—N3—C11—C10 | −173.55 (17) |
| C4—O1—C1—C2 | −58.5 (2) | C9—C10—C11—N3 | 0.7 (2) |
| C5—N1—C2—C1 | −175.98 (17) | N4—C10—C11—N3 | −178.01 (18) |
| C3—N1—C2—C1 | −56.1 (2) | C10—N4—C12—O3 | −0.9 (3) |
| O1—C1—C2—N1 | 59.5 (2) | C10—N4—C12—C13 | 179.47 (17) |
| C5—N1—C3—C4 | 175.41 (19) | C16—N5—C13—C14 | 0.0 (2) |
| C2—N1—C3—C4 | 55.0 (2) | C17—N5—C13—C14 | −174.61 (18) |
| C1—O1—C4—C3 | 57.3 (2) | C16—N5—C13—C12 | −179.14 (17) |
| N1—C3—C4—O1 | −56.8 (3) | C17—N5—C13—C12 | 6.2 (3) |
| C2—N1—C5—C6 | −69.5 (2) | O3—C12—C13—C14 | −175.9 (2) |
| C3—N1—C5—C6 | 171.44 (18) | N4—C12—C13—C14 | 3.7 (3) |
| C7—N2—C6—C5 | −148.35 (19) | O3—C12—C13—N5 | 3.1 (3) |
| N1—C5—C6—N2 | −75.6 (2) | N4—C12—C13—N5 | −177.36 (17) |
| C6—N2—C7—O2 | −4.8 (3) | N5—C13—C14—C15 | −0.3 (2) |
| C6—N2—C7—C8 | 171.58 (18) | C12—C13—C14—C15 | 178.8 (2) |
| C11—N3—C8—C9 | 0.4 (2) | C13—C14—C15—C16 | 0.4 (2) |
| C18—N3—C8—C9 | 172.56 (18) | C13—C14—C15—N6 | −179.62 (18) |
| C11—N3—C8—C7 | 172.58 (17) | O4—N6—C15—C16 | 177.15 (19) |
| C18—N3—C8—C7 | −15.3 (3) | O5—N6—C15—C16 | −3.9 (3) |
| O2—C7—C8—N3 | −2.9 (3) | O4—N6—C15—C14 | −2.8 (3) |
| N2—C7—C8—N3 | −179.27 (18) | O5—N6—C15—C14 | 176.11 (19) |
| O2—C7—C8—C9 | 167.3 (2) | C13—N5—C16—C15 | 0.2 (2) |
| N2—C7—C8—C9 | −9.0 (3) | C17—N5—C16—C15 | 175.17 (17) |
| N3—C8—C9—C10 | 0.0 (2) | C14—C15—C16—N5 | −0.4 (2) |
| C7—C8—C9—C10 | −171.38 (19) | N6—C15—C16—N5 | 179.63 (17) |
| C8—C9—C10—C11 | −0.5 (2) | C11—N3—C18—C19 | 101.0 (2) |
| C8—C9—C10—N4 | 178.35 (17) | C8—N3—C18—C19 | −70.2 (3) |
| C12—N4—C10—C11 | 5.5 (3) | N3—C18—C19—C20 | −172.88 (17) |
| C12—N4—C10—C9 | −173.06 (18) | N8—N7—C20—C19 | −163.3 (2) |
| C8—N3—C11—C10 | −0.7 (2) | C18—C19—C20—N7 | 63.8 (2) |
| H··· | ||||
| N2—H1 | 0.83 (2) | 2.36 (2) | 3.176 (2) | 171 (2) |
| N4—H2 | 0.88 (2) | 2.02 (2) | 2.864 (2) | 162 (2) |
| C2—H2 | 0.99 | 2.53 | 3.498 (3) | 165 |
| C6—H6 | 0.99 | 2.58 | 3.354 (3) | 135 |
| C9—H9···O5i | 0.95 | 2.43 | 3.322 (2) | 156 |
| C14—H14···O2ii | 0.95 | 2.46 | 3.317 (3) | 149 |