Literature DB >> 28217147

Automatic procedure for generating symmetry adapted wavefunctions.

Marcus Johansson1, Valera Veryazov1.   

Abstract

Automatic detection of point groups as well as symmetrisation of molecular geometry and wavefunctions are useful tools in computational quantum chemistry. Algorithms for developing these tools as well as an implementation are presented. The symmetry detection algorithm is a clustering algorithm for symmetry invariant properties, combined with logical deduction of possible symmetry elements using the geometry of sets of symmetrically equivalent atoms. An algorithm for determining the symmetry adapted linear combinations (SALCs) of atomic orbitals is also presented. The SALCs are constructed with the use of projection operators for the irreducible representations, as well as subgroups for determining splitting fields for a canonical basis. The character tables for the point groups are auto generated, and the algorithm is described. Symmetrisation of molecules use a projection into the totally symmetric space, whereas for wavefunctions projection as well and partner function determination and averaging is used. The software has been released as a stand-alone, open source library under the MIT license and integrated into both computational and molecular modelling software.Graphical abstract.

Entities:  

Keywords:  Molecular symmetry; Point group; Symmetry adapted; Wavefunction

Year:  2017        PMID: 28217147      PMCID: PMC5289936          DOI: 10.1186/s13321-017-0193-3

Source DB:  PubMed          Journal:  J Cheminform        ISSN: 1758-2946            Impact factor:   5.514


  6 in total

1.  MacMolPlt: a graphical user interface for GAMESS.

Authors:  B M Bode; M S Gordon
Journal:  J Mol Graph Model       Date:  1998-06       Impact factor: 2.518

2.  Symmetrizer: algorithmic determination of point groups in nearly symmetric molecules.

Authors:  R Jeffrey Largent; William F Polik; J R Schmidt
Journal:  J Comput Chem       Date:  2012-05-02       Impact factor: 3.376

3.  Molcas 8: New capabilities for multiconfigurational quantum chemical calculations across the periodic table.

Authors:  Francesco Aquilante; Jochen Autschbach; Rebecca K Carlson; Liviu F Chibotaru; Mickaël G Delcey; Luca De Vico; Ignacio Fdez Galván; Nicolas Ferré; Luis Manuel Frutos; Laura Gagliardi; Marco Garavelli; Angelo Giussani; Chad E Hoyer; Giovanni Li Manni; Hans Lischka; Dongxia Ma; Per Åke Malmqvist; Thomas Müller; Artur Nenov; Massimo Olivucci; Thomas Bondo Pedersen; Daoling Peng; Felix Plasser; Ben Pritchard; Markus Reiher; Ivan Rivalta; Igor Schapiro; Javier Segarra-Martí; Michael Stenrup; Donald G Truhlar; Liviu Ungur; Alessio Valentini; Steven Vancoillie; Valera Veryazov; Victor P Vysotskiy; Oliver Weingart; Felipe Zapata; Roland Lindh
Journal:  J Comput Chem       Date:  2015-11-12       Impact factor: 3.376

4.  Algorithms for computer detection of symmetry elements in molecular systems.

Authors:  Otávio Beruski; Luciano N Vidal
Journal:  J Comput Chem       Date:  2013-11-25       Impact factor: 3.376

5.  Luscus: molecular viewer and editor for MOLCAS.

Authors:  Goran Kovačević; Valera Veryazov
Journal:  J Cheminform       Date:  2015-04-29       Impact factor: 5.514

6.  Avogadro: an advanced semantic chemical editor, visualization, and analysis platform.

Authors:  Marcus D Hanwell; Donald E Curtis; David C Lonie; Tim Vandermeersch; Eva Zurek; Geoffrey R Hutchison
Journal:  J Cheminform       Date:  2012-08-13       Impact factor: 5.514

  6 in total
  1 in total

1.  Efficient Estimation of Formation Enthalpies for Closed-Shell Organic Compounds with Local Coupled-Cluster Methods.

Authors:  Eugene Paulechka; Andrei Kazakov
Journal:  J Chem Theory Comput       Date:  2018-10-05       Impact factor: 6.006

  1 in total

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