Literature DB >> 28217040

Multi-species Ontologies of the Craniofacial Musculoskeletal System.

Jose L V Mejino1, Landon T Detwiler1, Timothy C Cox2, James F Brinkley3.   

Abstract

We created the Ontology of Craniofacial Development and Malformation (OCDM) [1] to provide a unifying framework for organizing and integrating craniofacial data ranging from genes to clinical phenotypes from multi-species. Within this framework we focused on spatio-structural representation of anatomical entities related to craniofacial development and malformation, such as craniosynostosis and midface hypoplasia. Animal models are used to support human studies and so we built multi-species ontologies that would allow for cross-species correlation of anatomical information. For this purpose we first developed and enhanced the craniofacial component of the human musculoskeletal system in the Foundational Model of Anatomy Ontology (FMA)[2], and then imported this component, which we call the Craniofacial Human Ontology (CHO), into the OCDM. The CHO was then used as a template to create the anatomy for the mouse, the Craniofacial Mouse Ontology (CMO) as well as for the zebrafish, the Craniofacial Zebrafish Ontology (CZO).

Entities:  

Keywords:  Craniofacial Congenital Abnormalities; FaceBase Consortium; Foundational Model of Anatomy; Ontology of Craniofacial Development and Malformation

Year:  2016        PMID: 28217040      PMCID: PMC5311076     

Source DB:  PubMed          Journal:  CEUR Workshop Proc        ISSN: 1613-0073


  4 in total

Review 1.  The ontology of craniofacial development and malformation for translational craniofacial research.

Authors:  J F Brinkley; C Borromeo; M Clarkson; T C Cox; M J Cunningham; L T Detwiler; C L Heike; H Hochheiser; J L V Mejino; R S Travillian; L G Shapiro
Journal:  Am J Med Genet C Semin Med Genet       Date:  2013-10-04       Impact factor: 3.908

2.  The FaceBase Consortium: a comprehensive program to facilitate craniofacial research.

Authors:  Harry Hochheiser; Bruce J Aronow; Kristin Artinger; Terri H Beaty; James F Brinkley; Yang Chai; David Clouthier; Michael L Cunningham; Michael Dixon; Leah Rae Donahue; Scott E Fraser; Benedikt Hallgrimsson; Junichi Iwata; Ophir Klein; Mary L Marazita; Jeffrey C Murray; Stephen Murray; Fernando Pardo-Manuel de Villena; John Postlethwait; Steven Potter; Linda Shapiro; Richard Spritz; Axel Visel; Seth M Weinberg; Paul A Trainor
Journal:  Dev Biol       Date:  2011-03-31       Impact factor: 3.582

3.  ZFIN, The zebrafish model organism database: Updates and new directions.

Authors:  Leyla Ruzicka; Yvonne M Bradford; Ken Frazer; Douglas G Howe; Holly Paddock; Sridhar Ramachandran; Amy Singer; Sabrina Toro; Ceri E Van Slyke; Anne E Eagle; David Fashena; Patrick Kalita; Jonathan Knight; Prita Mani; Ryan Martin; Sierra A T Moxon; Christian Pich; Kevin Schaper; Xiang Shao; Monte Westerfield
Journal:  Genesis       Date:  2015-07-08       Impact factor: 2.487

4.  The Adult Mouse Anatomical Dictionary: a tool for annotating and integrating data.

Authors:  Terry F Hayamizu; Mary Mangan; John P Corradi; James A Kadin; Martin Ringwald
Journal:  Genome Biol       Date:  2005-02-15       Impact factor: 13.583

  4 in total

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