Literature DB >> 28214931

Subtle.Nets.Finder: finely tuned interaction networks in DNA/RNA/protein complexes.

Alexander A Kantardjiev1.   

Abstract

Graphical Abstract Subtle.Nets.Finder is a workflow of algorithms for identification of subtly interacting groups in DNA/RNA/protein complexes. It is founded on detailed and sophisticated evaluation of the self-consistency in the cooperative network of residue interactions via a combination of advanced calculations (fast multipole method and statistical mechanics) supplemented with graph-theoretical procedures.

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Year:  2017        PMID: 28214931     DOI: 10.1007/s00894-017-3262-7

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  4 in total

Review 1.  Generalized born models of macromolecular solvation effects.

Authors:  D Bashford; D A Case
Journal:  Annu Rev Phys Chem       Date:  2000       Impact factor: 12.703

2.  irGPU.proton.Net: Irregular strong charge interaction networks of protonatable groups in protein molecules--a GPU solver using the fast multipole method and statistical thermodynamics.

Authors:  Alexander A Kantardjiev
Journal:  J Comput Chem       Date:  2015-02-03       Impact factor: 3.376

3.  GPU.proton.DOCK: Genuine Protein Ultrafast proton equilibria consistent DOCKing.

Authors:  Alexander A Kantardjiev
Journal:  Nucleic Acids Res       Date:  2011-06-11       Impact factor: 16.971

4.  Quantum.Ligand.Dock: protein-ligand docking with quantum entanglement refinement on a GPU system.

Authors:  Alexander A Kantardjiev
Journal:  Nucleic Acids Res       Date:  2012-06-04       Impact factor: 16.971

  4 in total

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