Literature DB >> 28212112

Cancer as robust intrinsic state shaped by evolution: a key issues review.

Ruoshi Yuan1, Xiaomei Zhu, Gaowei Wang, Site Li, Ping Ao.   

Abstract

Cancer is a complex disease: its pathology cannot be properly understood in terms of independent players-genes, proteins, molecular pathways, or their simple combinations. This is similar to many-body physics of a condensed phase that many important properties are not determined by a single atom or molecule. The rapidly accumulating large 'omics' data also require a new mechanistic and global underpinning to organize for rationalizing cancer complexity. A unifying and quantitative theory was proposed by some of the present authors that cancer is a robust state formed by the endogenous molecular-cellular network, which is evolutionarily built for the developmental processes and physiological functions. Cancer state is not optimized for the whole organism. The discovery of crucial players in cancer, together with their developmental and physiological roles, in turn, suggests the existence of a hierarchical structure within molecular biology systems. Such a structure enables a decision network to be constructed from experimental knowledge. By examining the nonlinear stochastic dynamics of the network, robust states corresponding to normal physiological and abnormal pathological phenotypes, including cancer, emerge naturally. The nonlinear dynamical model of the network leads to a more encompassing understanding than the prevailing linear-additive thinking in cancer research. So far, this theory has been applied to prostate, hepatocellular, gastric cancers and acute promyelocytic leukemia with initial success. It may offer an example of carrying physics inquiring spirit beyond its traditional domain: while quantitative approaches can address individual cases, however there must be general rules/laws to be discovered in biology and medicine.

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Year:  2017        PMID: 28212112     DOI: 10.1088/1361-6633/aa538e

Source DB:  PubMed          Journal:  Rep Prog Phys        ISSN: 0034-4885


  16 in total

1.  State-Transition Analysis of Time-Sequential Gene Expression Identifies Critical Points That Predict Development of Acute Myeloid Leukemia.

Authors:  Russell C Rockne; Sergio Branciamore; Jing Qi; Ya-Huei Kuo; Guido Marcucci; David E Frankhouser; Denis O'Meally; Wei-Kai Hua; Guerry Cook; Emily Carnahan; Lianjun Zhang; Ayelet Marom; Herman Wu; Davide Maestrini; Xiwei Wu; Yate-Ching Yuan; Zheng Liu; Leo D Wang; Stephen Forman; Nadia Carlesso
Journal:  Cancer Res       Date:  2020-05-15       Impact factor: 12.701

2.  Cell cycle time series gene expression data encoded as cyclic attractors in Hopfield systems.

Authors:  Anthony Szedlak; Spencer Sims; Nicholas Smith; Giovanni Paternostro; Carlo Piermarocchi
Journal:  PLoS Comput Biol       Date:  2017-11-17       Impact factor: 4.475

3.  Evolutionary Origins of Cancer Driver Genes and Implications for Cancer Prognosis.

Authors:  Xin-Yi Chu; Ling-Han Jiang; Xiong-Hui Zhou; Ze-Jia Cui; Hong-Yu Zhang
Journal:  Genes (Basel)       Date:  2017-07-14       Impact factor: 4.096

Review 4.  Cell plasticity in cancer cell populations.

Authors:  Shensi Shen; Jean Clairambault
Journal:  F1000Res       Date:  2020-06-22

5.  Nach Is a Novel Subgroup at an Early Evolutionary Stage of the CNC-bZIP Subfamily Transcription Factors from the Marine Bacteria to Humans.

Authors:  Yu-Ping Zhu; Meng Wang; Yuancai Xiang; Lu Qiu; Shaofan Hu; Zhengwen Zhang; Peter Mattjus; Xiaomei Zhu; Yiguo Zhang
Journal:  Int J Mol Sci       Date:  2018-09-26       Impact factor: 5.923

6.  Homeostasis and systematic ageing as non-equilibrium phase transitions in computational multicellular organizations.

Authors:  Yuting Lou; Ao Chen; Erika Yoshida; Yu Chen
Journal:  R Soc Open Sci       Date:  2019-07-10       Impact factor: 2.963

7.  Cancer Niches and Their Kikuchi Free Energy.

Authors:  Noor Sajid; Laura Convertino; Karl Friston
Journal:  Entropy (Basel)       Date:  2021-05-14       Impact factor: 2.524

8.  Beyond cancer genes: colorectal cancer as robust intrinsic states formed by molecular interactions.

Authors:  Ruoshi Yuan; Suzhan Zhang; Jiekai Yu; Yanqin Huang; Demin Lu; Runtan Cheng; Sui Huang; Ping Ao; Shu Zheng; Leroy Hood; Xiaomei Zhu
Journal:  Open Biol       Date:  2017-11       Impact factor: 6.411

9.  Potential landscape of high dimensional nonlinear stochastic dynamics with large noise.

Authors:  Ying Tang; Ruoshi Yuan; Gaowei Wang; Xiaomei Zhu; Ping Ao
Journal:  Sci Rep       Date:  2017-11-17       Impact factor: 4.379

Review 10.  Answering Schrödinger's question: A free-energy formulation.

Authors:  Maxwell James Désormeau Ramstead; Paul Benjamin Badcock; Karl John Friston
Journal:  Phys Life Rev       Date:  2017-09-20       Impact factor: 11.025

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