Literature DB >> 28204854

Adsorption of DNA binding proteins to functionalized carbon nanotube surfaces with and without DNA wrapping.

Yu Ishibashi1, Shusuke Oura1, Kazuo Umemura2.   

Abstract

We examined the adsorption of DNA binding proteins on functionalized, single-walled carbon nanotubes (SWNTs). When SWNTs were functionalized with polyethylene glycol (PEG-SWNT), moderate adsorption of protein molecules was observed. In contrast, nanotubes functionalized with CONH2 groups (CONH2-SWNT) exhibited very strong interactions between the CONH2-SWNT and DNA binding proteins. Instead, when these SWNT surfaces were wrapped with DNA molecules (thymine 30-mers), protein binding was a little decreased. Our results revealed that DNA wrapped PEG-SWNT was one of the most promising candidates to realize DNA nanodevices involving protein reactions on DNA-SWNT surfaces. In addition, the DNA binding protein RecA was more adhesive than single-stranded DNA binding proteins to the functionalized SWNT surfaces.

Entities:  

Keywords:  Atomic force microscopy; DNA; DNA binding proteins; Polyethylene glycol; Single-walled carbon nanotubes

Mesh:

Substances:

Year:  2017        PMID: 28204854     DOI: 10.1007/s00249-017-1200-3

Source DB:  PubMed          Journal:  Eur Biophys J        ISSN: 0175-7571            Impact factor:   1.733


  22 in total

1.  Noncovalent sidewall functionalization of single-walled carbon nanotubes for protein immobilization.

Authors:  R J Chen; Y Zhang; D Wang; H Dai
Journal:  J Am Chem Soc       Date:  2001-04-25       Impact factor: 15.419

2.  Sequence-independent helical wrapping of single-walled carbon nanotubes by long genomic DNA.

Authors:  Brittany Gigliotti; Brenda Sakizzie; Donald S Bethune; Robert M Shelby; Jennifer N Cha
Journal:  Nano Lett       Date:  2006-02       Impact factor: 11.189

3.  Controlling the adsorption and desorption of double-stranded DNA on functionalized carbon nanotube surface.

Authors:  Daisuke Nii; Takuya Hayashida; Kazuo Umemura
Journal:  Colloids Surf B Biointerfaces       Date:  2013-02-04       Impact factor: 5.268

4.  Rapid, sensitive, and selective fluorescent DNA detection using iron-based metal-organic framework nanorods: Synergies of the metal center and organic linker.

Authors:  Jingqi Tian; Qian Liu; Jinle Shi; Jianming Hu; Abdullah M Asiri; Xuping Sun; Yuquan He
Journal:  Biosens Bioelectron       Date:  2015-04-08       Impact factor: 10.618

5.  Synthesis and characterization of water soluble single-walled carbon nanotube graft copolymers.

Authors:  Bin Zhao; Hui Hu; Aiping Yu; Daniel Perea; Robert C Haddon
Journal:  J Am Chem Soc       Date:  2005-06-08       Impact factor: 15.419

6.  Biomolecular recognition ability of RecA proteins for DNA on single-walled carbon nanotubes.

Authors:  Shusuke Oura; Masahiro Ito; Daisuke Nii; Yoshikazu Homma; Kazuo Umemura
Journal:  Colloids Surf B Biointerfaces       Date:  2015-01-10       Impact factor: 5.268

Review 7.  Adsorption mechanisms of organic chemicals on carbon nanotubes.

Authors:  Bo Pan; Baoshan Xing
Journal:  Environ Sci Technol       Date:  2008-12-15       Impact factor: 9.028

8.  DNA-assisted dispersion and separation of carbon nanotubes.

Authors:  Ming Zheng; Anand Jagota; Ellen D Semke; Bruce A Diner; Robert S McLean; Steve R Lustig; Raymond E Richardson; Nancy G Tassi
Journal:  Nat Mater       Date:  2003-05       Impact factor: 43.841

9.  Functionalization of carbon nanotubes with bovine serum albumin in homogeneous aqueous solution.

Authors:  Kefu Fu; Weijie Huang; Yi Lin; Donghui Zhang; Timothy W Hanks; Apparao M Rao; Ya-Ping Sun
Journal:  J Nanosci Nanotechnol       Date:  2002-10

Review 10.  Probe Microscopic Studies of DNA Molecules on Carbon Nanotubes.

Authors:  Kazuo Umemura; Katsuki Izumi; Shusuke Oura
Journal:  Nanomaterials (Basel)       Date:  2016-10-08       Impact factor: 5.076

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  2 in total

Review 1.  Multifunctional carbon nanomaterials for diagnostic applications in infectious diseases and tumors.

Authors:  Yang He; Chenyan Hu; Zhijia Li; Chuan Wu; Yuanyuan Zeng; Cheng Peng
Journal:  Mater Today Bio       Date:  2022-03-05

Review 2.  Scanning Techniques for Nanobioconjugates of Carbon Nanotubes.

Authors:  Kazuo Umemura; Shizuma Sato
Journal:  Scanning       Date:  2018-06-13       Impact factor: 1.932

  2 in total

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