Literature DB >> 28202660

Technological advances for interrogating the human kinome.

Akanksha Baharani1,2, Brett Trost3, Anthony Kusalik4, Scott Napper5,2.   

Abstract

There is increasing appreciation among researchers and clinicians of the value of investigating biology and pathobiology at the level of cellular kinase (kinome) activity. Kinome analysis provides valuable opportunity to gain insights into complex biology (including disease pathology), identify biomarkers of critical phenotypes (including disease prognosis and evaluation of therapeutic efficacy), and identify targets for therapeutic intervention through kinase inhibitors. The growing interest in kinome analysis has fueled efforts to develop and optimize technologies that enable characterization of phosphorylation-mediated signaling events in a cost-effective, high-throughput manner. In this review, we highlight recent advances to the central technologies currently available for kinome profiling and offer our perspectives on the key challenges remaining to be addressed.
© 2017 The Author(s); published by Portland Press Limited on behalf of the Biochemical Society.

Entities:  

Keywords:  DAPPLE; PIIKA; PamChip; kinase; kinome; peptide arrays

Mesh:

Substances:

Year:  2017        PMID: 28202660     DOI: 10.1042/BST20160163

Source DB:  PubMed          Journal:  Biochem Soc Trans        ISSN: 0300-5127            Impact factor:   5.407


  11 in total

1.  Smoothened-dependent and -independent pathways in mammalian noncanonical Hedgehog signaling.

Authors:  Alessandra V de S Faria; Adamu Ishaku Akyala; Kaushal Parikh; Lois W Brüggemann; C Arnold Spek; Wanlu Cao; Marco J Bruno; Maarten F Bijlsma; Gwenny M Fuhler; Maikel P Peppelenbosch
Journal:  J Biol Chem       Date:  2019-04-16       Impact factor: 5.157

2.  Echinacea purpurea (L.) Moench treatment of monocytes promotes tonic interferon signaling, increased innate immunity gene expression and DNA repeat hypermethylated silencing of endogenous retroviral sequences.

Authors:  Ken Declerck; Claudina Perez Novo; Lisa Grielens; Guy Van Camp; Andreas Suter; Wim Vanden Berghe
Journal:  BMC Complement Med Ther       Date:  2021-05-12

3.  Kinomics toolbox-A web platform for analysis and viewing of kinomic peptide array data.

Authors:  Alex M Dussaq; Timothy Kennell; Nicholas J Eustace; Joshua C Anderson; Jonas S Almeida; Christopher D Willey
Journal:  PLoS One       Date:  2018-08-21       Impact factor: 3.240

4.  Human mesenchymal stromal cells in adhesion to cell-derived extracellular matrix and titanium: Comparative kinome profile analysis.

Authors:  Marta Baroncelli; Gwenny M Fuhler; Jeroen van de Peppel; Willian F Zambuzzi; Johannes P van Leeuwen; Bram C J van der Eerden; Maikel P Peppelenbosch
Journal:  J Cell Physiol       Date:  2018-07-30       Impact factor: 6.384

5.  A mechanistic evaluation of the angiogenic properties of a dehydrated amnion chorion membrane in vitro and in vivo.

Authors:  John P McQuilling; Miranda Burnette; Kelly A Kimmerling; MaryRose Kammer; Katie C Mowry
Journal:  Wound Repair Regen       Date:  2019-08-29       Impact factor: 3.617

6.  TNFα-Signaling Modulates the Kinase Activity of Human Effector Treg and Regulates IL-17A Expression.

Authors:  Paulo C M Urbano; Xuehui He; Bennie van Heeswijk; Omar P S Filho; Henk Tijssen; Ruben L Smeets; Irma Joosten; Hans J P M Koenen
Journal:  Front Immunol       Date:  2020-01-21       Impact factor: 7.561

7.  Photoswitchable Azo- and Diazocine-Functionalized Derivatives of the VEGFR-2 Inhibitor Axitinib.

Authors:  Linda Heintze; Dorian Schmidt; Theo Rodat; Lydia Witt; Julia Ewert; Malte Kriegs; Rainer Herges; Christian Peifer
Journal:  Int J Mol Sci       Date:  2020-11-25       Impact factor: 5.923

8.  PamgeneAnalyzeR: open and reproducible pipeline for kinase profiling.

Authors:  Amel Bekkar; Anita Nasrallah; Nicolas Guex; Lluis Fajas; Ioannis Xenarios; Isabel C Lopez-Mejia
Journal:  Bioinformatics       Date:  2020-12-22       Impact factor: 6.937

9.  KRSA: An R package and R Shiny web application for an end-to-end upstream kinase analysis of kinome array data.

Authors:  Erica A K DePasquale; Khaled Alganem; Eduard Bentea; Nawshaba Nawreen; Jennifer L McGuire; Tushar Tomar; Faris Naji; Riet Hilhorst; Jaroslaw Meller; Robert E McCullumsmith
Journal:  PLoS One       Date:  2021-12-17       Impact factor: 3.240

Review 10.  Histidine kinases and the missing phosphoproteome from prokaryotes to eukaryotes.

Authors:  Kevin Adam; Tony Hunter
Journal:  Lab Invest       Date:  2017-10-23       Impact factor: 5.662

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