Literature DB >> 28197303

Optimization of 3-Pyrimidin-4-yl-oxazolidin-2-ones as Allosteric and Mutant Specific Inhibitors of IDH1.

Julian R Levell1, Thomas Caferro1, Gregg Chenail1, Ina Dix1, Julia Dooley1, Brant Firestone1, Pascal D Fortin1, John Giraldes1, Ty Gould1, Joseph D Growney1, Michael D Jones1, Raviraj Kulathila1, Fallon Lin1, Gang Liu1, Arne Mueller1, Simon van der Plas1, Kelly Slocum1, Troy Smith1, Remi Terranova1, B Barry Touré1, Viraj Tyagi1, Trixie Wagner1, Xiaoling Xie1, Ming Xu1, Fan S Yang1, Liping X Zhou1, Raymond Pagliarini1, Young Shin Cho1.   

Abstract

High throughput screening and subsequent hit validation identified 4-isopropyl-3-(2-((1-phenylethyl)amino)pyrimidin-4-yl)oxazolidin-2-one as a potent inhibitor of IDH1R132H. Synthesis of the four separate stereoisomers identified the (S,S)-diastereomer (IDH125, 1f) as the most potent isomer. This also showed reasonable cellular activity and excellent selectivity vs IDH1wt. Initial structure-activity relationship exploration identified the key tolerances and potential for optimization. X-ray crystallography identified a functionally relevant allosteric binding site amenable to inhibitors, which can penetrate the blood-brain barrier, and aided rational optimization. Potency improvement and modulation of the physicochemical properties identified (S,S)-oxazolidinone IDH889 (5x) with good exposure and 2-HG inhibitory activity in a mutant IDH1 xenograft mouse model.

Entities:  

Keywords:  2-HG; 3-pyrimidin-4-yloxazolidin-2-one; Mutant IDH1 inhibitor; allosteric inhibition; chirality-defined potency; preclinical in vivo activity

Year:  2016        PMID: 28197303      PMCID: PMC5304300          DOI: 10.1021/acsmedchemlett.6b00334

Source DB:  PubMed          Journal:  ACS Med Chem Lett        ISSN: 1948-5875            Impact factor:   4.345


  16 in total

1.  Small-molecule kinase inhibitors: an analysis of FDA-approved drugs.

Authors:  Peng Wu; Thomas E Nielsen; Mads H Clausen
Journal:  Drug Discov Today       Date:  2015-07-23       Impact factor: 7.851

Review 2.  CNS drug design: balancing physicochemical properties for optimal brain exposure.

Authors:  Zoran Rankovic
Journal:  J Med Chem       Date:  2015-01-06       Impact factor: 7.446

3.  Allosteric Mutant IDH1 Inhibitors Reveal Mechanisms for IDH1 Mutant and Isoform Selectivity.

Authors:  Xiaoling Xie; Daniel Baird; Kimberly Bowen; Vladimir Capka; Jinyun Chen; Gregg Chenail; YoungShin Cho; Julia Dooley; Ali Farsidjani; Pascal Fortin; Darcy Kohls; Raviraj Kulathila; Fallon Lin; Daniel McKay; Lindsey Rodrigues; David Sage; B Barry Touré; Simon van der Plas; Kirk Wright; Ming Xu; Hong Yin; Julian Levell; Raymond A Pagliarini
Journal:  Structure       Date:  2017-01-26       Impact factor: 5.006

4.  Discovery of the First Potent Inhibitors of Mutant IDH1 That Lower Tumor 2-HG in Vivo.

Authors:  Janeta Popovici-Muller; Jeffrey O Saunders; Francesco G Salituro; Jeremy M Travins; Shunqi Yan; Fang Zhao; Stefan Gross; Lenny Dang; Katharine E Yen; Hua Yang; Kimberly S Straley; Shengfang Jin; Kaiko Kunii; Valeria R Fantin; Shunan Zhang; Qiongqun Pan; Derek Shi; Scott A Biller; Shinsan M Su
Journal:  ACS Med Chem Lett       Date:  2012-09-17       Impact factor: 4.345

5.  New IDH1 mutant inhibitors for treatment of acute myeloid leukemia.

Authors:  Ujunwa C Okoye-Okafor; Boris Bartholdy; Jessy Cartier; Enoch N Gao; Beth Pietrak; Alan R Rendina; Cynthia Rominger; Chad Quinn; Angela Smallwood; Kenneth J Wiggall; Alexander J Reif; Stanley J Schmidt; Hongwei Qi; Huizhen Zhao; Gerard Joberty; Maria Faelth-Savitski; Marcus Bantscheff; Gerard Drewes; Chaya Duraiswami; Pat Brady; Arthur Groy; Swathi-Rao Narayanagari; Iléana Antony-Debre; Kelly Mitchell; Heng Rui Wang; Yun-Ruei Kao; Maximilian Christopeit; Luis Carvajal; Laura Barreyro; Elisabeth Paietta; Hideki Makishima; Britta Will; Nestor Concha; Nicholas D Adams; Benjamin Schwartz; Michael T McCabe; Jaroslav Maciejewski; Amit Verma; Ulrich Steidl
Journal:  Nat Chem Biol       Date:  2015-10-05       Impact factor: 15.040

6.  Identification and Characterization of Small-Molecule Inhibitors of the R132H/R132H Mutant Isocitrate Dehydrogenase 1 Homodimer and R132H/Wild-Type Heterodimer.

Authors:  Eric Brooks; Xiang Wu; Art Hanel; Shaun Nguyen; Jing Wang; Jeffrey H Zhang; Amanda Harrison; Wentao Zhang
Journal:  J Biomol Screen       Date:  2014-06-30

7.  Cancer-associated IDH1 mutations produce 2-hydroxyglutarate.

Authors:  Lenny Dang; David W White; Stefan Gross; Bryson D Bennett; Mark A Bittinger; Edward M Driggers; Valeria R Fantin; Hyun Gyung Jang; Shengfang Jin; Marie C Keenan; Kevin M Marks; Robert M Prins; Patrick S Ward; Katharine E Yen; Linda M Liau; Joshua D Rabinowitz; Lewis C Cantley; Craig B Thompson; Matthew G Vander Heiden; Shinsan M Su
Journal:  Nature       Date:  2009-12-10       Impact factor: 49.962

8.  An inhibitor of mutant IDH1 delays growth and promotes differentiation of glioma cells.

Authors:  Dan Rohle; Janeta Popovici-Muller; Nicolaos Palaskas; Sevin Turcan; Christian Grommes; Carl Campos; Jennifer Tsoi; Owen Clark; Barbara Oldrini; Evangelia Komisopoulou; Kaiko Kunii; Alicia Pedraza; Stefanie Schalm; Lee Silverman; Alexandra Miller; Fang Wang; Hua Yang; Yue Chen; Andrew Kernytsky; Marc K Rosenblum; Wei Liu; Scott A Biller; Shinsan M Su; Cameron W Brennan; Timothy A Chan; Thomas G Graeber; Katharine E Yen; Ingo K Mellinghoff
Journal:  Science       Date:  2013-04-04       Impact factor: 47.728

9.  IDH1 mutation is sufficient to establish the glioma hypermethylator phenotype.

Authors:  Sevin Turcan; Daniel Rohle; Anuj Goenka; Logan A Walsh; Fang Fang; Emrullah Yilmaz; Carl Campos; Armida W M Fabius; Chao Lu; Patrick S Ward; Craig B Thompson; Andrew Kaufman; Olga Guryanova; Ross Levine; Adriana Heguy; Agnes Viale; Luc G T Morris; Jason T Huse; Ingo K Mellinghoff; Timothy A Chan
Journal:  Nature       Date:  2012-02-15       Impact factor: 69.504

Review 10.  Oncogenic isocitrate dehydrogenase mutations: mechanisms, models, and clinical opportunities.

Authors:  Rob A Cairns; Tak W Mak
Journal:  Cancer Discov       Date:  2013-06-24       Impact factor: 38.272

View more
  15 in total

1.  Novel Insights for Inhibiting Mutant Heterodimer IDH1wt-R132H in Cancer: An In-Silico Approach.

Authors:  Ezequiel Iván Juritz; Juan Pablo Bascur; Daniel Eduardo Almonacid; Fernando Danilo González-Nilo
Journal:  Mol Diagn Ther       Date:  2018-06       Impact factor: 4.074

Review 2.  Chromatin dynamics underlying latent responses to xenobiotics.

Authors:  Jonathan Moggs; Rémi Terranova
Journal:  Toxicol Res (Camb)       Date:  2018-02-28       Impact factor: 3.524

Review 3.  Advances in the Immunotherapeutic Potential of Isocitrate Dehydrogenase Mutations in Glioma.

Authors:  Feng Tang; Zhiyong Pan; Yi Wang; Tian Lan; Mengyue Wang; Fengping Li; Wei Quan; Zhenyuan Liu; Zefen Wang; Zhiqiang Li
Journal:  Neurosci Bull       Date:  2022-06-07       Impact factor: 5.271

4.  Optimization of 3-Pyrimidin-4-yl-oxazolidin-2-ones as Orally Bioavailable and Brain Penetrant Mutant IDH1 Inhibitors.

Authors:  Qian Zhao; James R Manning; James Sutton; Abran Costales; Martin Sendzik; Cynthia M Shafer; Julian R Levell; Gang Liu; Thomas Caferro; Young Shin Cho; Mark Palermo; Gregg Chenail; Julia Dooley; Brian Villalba; Ali Farsidjani; Jinyun Chen; Stephanie Dodd; Ty Gould; Guiqing Liang; Kelly Slocum; Minying Pu; Brant Firestone; Joseph Growney; Tycho Heimbach; Raymond Pagliarini
Journal:  ACS Med Chem Lett       Date:  2018-06-11       Impact factor: 4.345

Review 5.  The implications of IDH mutations for cancer development and therapy.

Authors:  Christopher J Pirozzi; Hai Yan
Journal:  Nat Rev Clin Oncol       Date:  2021-06-15       Impact factor: 66.675

6.  Discovery and Evaluation of Clinical Candidate IDH305, a Brain Penetrant Mutant IDH1 Inhibitor.

Authors:  Young Shin Cho; Julian R Levell; Gang Liu; Thomas Caferro; James Sutton; Cynthia M Shafer; Abran Costales; James R Manning; Qian Zhao; Martin Sendzik; Michael Shultz; Gregg Chenail; Julia Dooley; Brian Villalba; Ali Farsidjani; Jinyun Chen; Raviraj Kulathila; Xiaoling Xie; Stephanie Dodd; Ty Gould; Guiqing Liang; Tycho Heimbach; Kelly Slocum; Brant Firestone; Minying Pu; Raymond Pagliarini; Joseph D Growney
Journal:  ACS Med Chem Lett       Date:  2017-09-18       Impact factor: 4.345

7.  Water Networks and Correlated Motions in Mutant Isocitrate Dehydrogenase 1 (IDH1) Are Critical for Allosteric Inhibitor Binding and Activity.

Authors:  Jennifer M Chambers; Wade Miller; Giovanni Quichocho; Viraj Upadhye; Diego Avellaneda Matteo; Andrey A Bobkov; Christal D Sohl; Jamie M Schiffer
Journal:  Biochemistry       Date:  2020-01-13       Impact factor: 3.162

8.  QSAR analysis of 3-pyrimidin-4-yl-oxazolidin-2-one derivatives isocitrate dehydrogenase inhibitors using Topomer CoMFA and HQSAR methods.

Authors:  Jian-Bo Tong; Shuai Bian; Xing Zhang; Ding Luo
Journal:  Mol Divers       Date:  2021-05-11       Impact factor: 2.943

Review 9.  Beyond Brooding on Oncometabolic Havoc in IDH-Mutant Gliomas and AML: Current and Future Therapeutic Strategies.

Authors:  Hanumantha Rao Madala; Surendra R Punganuru; Viswanath Arutla; Subhasis Misra; T J Thomas; Kalkunte S Srivenugopal
Journal:  Cancers (Basel)       Date:  2018-02-11       Impact factor: 6.639

10.  Assessing inhibitors of mutant isocitrate dehydrogenase using a suite of pre-clinical discovery assays.

Authors:  Daniel J Urban; Natalia J Martinez; Mindy I Davis; Kyle R Brimacombe; Dorian M Cheff; Tobie D Lee; Mark J Henderson; Steven A Titus; Rajan Pragani; Jason M Rohde; Li Liu; Yuhong Fang; Surendra Karavadhi; Pranav Shah; Olivia W Lee; Amy Wang; Andrew McIver; Hongchao Zheng; Xiaodong Wang; Xin Xu; Ajit Jadhav; Anton Simeonov; Min Shen; Matthew B Boxer; Matthew D Hall
Journal:  Sci Rep       Date:  2017-10-06       Impact factor: 4.379

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.