Literature DB >> 28195142

A genome-wide association study yields five novel thyroid cancer risk loci.

Julius Gudmundsson1, Gudmar Thorleifsson1, Jon K Sigurdsson1, Lilja Stefansdottir1, Jon G Jonasson2,3,4, Sigurjon A Gudjonsson1, Daniel F Gudbjartsson1, Gisli Masson1, Hrefna Johannsdottir1, Gisli H Halldorsson1, Simon N Stacey1, Hannes Helgason1,5, Patrick Sulem1, Leigha Senter6, Huiling He7, Sandya Liyanarachchi7, Matthew D Ringel8, Esperanza Aguillo9, Angeles Panadero10, Enrique Prats11, Almudena Garcia-Castaño12, Ana De Juan12, Fernando Rivera12, Li Xu13, Lambertus A Kiemeney14, Gudmundur I Eyjolfsson15, Olof Sigurdardottir16, Isleifur Olafsson2, Hoskuldur Kristvinsson2, Romana T Netea-Maier17, Thorvaldur Jonsson2,3, Jose I Mayordomo18, Theo S Plantinga19, Hannes Hjartarson2, Jon Hrafnkelsson2, Erich M Sturgis13, Unnur Thorsteinsdottir1,3, Thorunn Rafnar1, Albert de la Chapelle7, Kari Stefansson1,3.   

Abstract

The great majority of thyroid cancers are of the non-medullary type. Here we report findings from a genome-wide association study of non-medullary thyroid cancer, including in total 3,001 patients and 287,550 controls from five study groups of European descent. Our results yield five novel loci (all with Pcombined<3 × 10-8): 1q42.2 (rs12129938 in PCNXL2), 3q26.2 (rs6793295 a missense mutation in LRCC34 near TERC), 5q22.1 (rs73227498 between NREP and EPB41L4A), 10q24.33 (rs7902587 near OBFC1), and two independently associated variants at 15q22.33 (rs2289261 and rs56062135; both in SMAD3). We also confirm recently published association results from a Chinese study of a variant on 5p15.33 (rs2736100 near the TERT gene) and present a stronger association result for a moderately correlated variant (rs10069690; OR=1.20, P=3.2 × 10-7) based on our study of individuals of European ancestry. In combination, these results raise several opportunities for future studies of the pathogenesis of thyroid cancer.

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Year:  2017        PMID: 28195142      PMCID: PMC5316879          DOI: 10.1038/ncomms14517

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  58 in total

1.  Principal components analysis corrects for stratification in genome-wide association studies.

Authors:  Alkes L Price; Nick J Patterson; Robert M Plenge; Michael E Weinblatt; Nancy A Shadick; David Reich
Journal:  Nat Genet       Date:  2006-07-23       Impact factor: 38.330

2.  Genome-wide association study on differentiated thyroid cancer.

Authors:  Aleksandra Köhler; Bowang Chen; Federica Gemignani; Rossella Elisei; Cristina Romei; Gisella Figlioli; Monica Cipollini; Alfonso Cristaudo; Franco Bambi; Per Hoffmann; Stefan Herms; Michal Kalemba; Dorota Kula; Shelley Harris; Peter Broderick; Richard Houlston; Susana Pastor; Ricard Marcos; Antonia Velázquez; Barbara Jarzab; Kari Hemminki; Stefano Landi; Asta Försti
Journal:  J Clin Endocrinol Metab       Date:  2013-07-26       Impact factor: 5.958

3.  Lrrc34, a novel nucleolar protein, interacts with npm1 and ncl and has an impact on pluripotent stem cells.

Authors:  Sandra Lührig; Iliana Siamishi; Marieke Tesmer-Wolf; Ulrich Zechner; Wolfgang Engel; Jessica Nolte
Journal:  Stem Cells Dev       Date:  2014-08-05       Impact factor: 3.272

4.  Fine-mapping of two differentiated thyroid carcinoma susceptibility loci at 9q22.33 and 14q13.3 detects novel candidate functional SNPs in Europeans from metropolitan France and Melanesians from New Caledonia.

Authors:  Catherine Tcheandjieu; Fabienne Lesueur; Marie Sanchez; Dominique Baron-Dubourdieu; Anne-Valerie Guizard; Claire Mulot; Pierre Laurent-Puig; Claire Schvartz; Therese Truong; Pascal Guenel
Journal:  Int J Cancer       Date:  2016-03-30       Impact factor: 7.396

5.  Detection of sharing by descent, long-range phasing and haplotype imputation.

Authors:  Augustine Kong; Gisli Masson; Michael L Frigge; Arnaldur Gylfason; Pasha Zusmanovich; Gudmar Thorleifsson; Pall I Olason; Andres Ingason; Stacy Steinberg; Thorunn Rafnar; Patrick Sulem; Magali Mouy; Frosti Jonsson; Unnur Thorsteinsdottir; Daniel F Gudbjartsson; Hreinn Stefansson; Kari Stefansson
Journal:  Nat Genet       Date:  2008-09       Impact factor: 38.330

6.  Common variants near TERC are associated with mean telomere length.

Authors:  Veryan Codd; Massimo Mangino; Pim van der Harst; Peter S Braund; Michael Kaiser; Alan J Beveridge; Suzanne Rafelt; Jasbir Moore; Chris Nelson; Nicole Soranzo; Guangju Zhai; Ana M Valdes; Hannah Blackburn; Irene Mateo Leach; Rudolf A de Boer; Masayuki Kimura; Abraham Aviv; Alison H Goodall; Willem Ouwehand; Dirk J van Veldhuisen; Wiek H van Gilst; Gerjan Navis; Paul R Burton; Martin D Tobin; Alistair S Hall; John R Thompson; Tim Spector; Nilesh J Samani
Journal:  Nat Genet       Date:  2010-02-07       Impact factor: 38.330

7.  Genome-wide association study of relative telomere length.

Authors:  Jennifer Prescott; Peter Kraft; Daniel I Chasman; Sharon A Savage; Lisa Mirabello; Sonja I Berndt; Joel L Weissfeld; Jiali Han; Richard B Hayes; Stephen J Chanock; David J Hunter; Immaculata De Vivo
Journal:  PLoS One       Date:  2011-05-10       Impact factor: 3.240

8.  A user's guide to the encyclopedia of DNA elements (ENCODE).

Authors: 
Journal:  PLoS Biol       Date:  2011-04-19       Impact factor: 8.029

9.  A global reference for human genetic variation.

Authors:  Adam Auton; Lisa D Brooks; Richard M Durbin; Erik P Garrison; Hyun Min Kang; Jan O Korbel; Jonathan L Marchini; Shane McCarthy; Gil A McVean; Gonçalo R Abecasis
Journal:  Nature       Date:  2015-10-01       Impact factor: 49.962

10.  Common variation at 3q26.2, 6p21.33, 17p11.2 and 22q13.1 influences multiple myeloma risk.

Authors:  Daniel Chubb; Niels Weinhold; Peter Broderick; Bowang Chen; David C Johnson; Asta Försti; Jayaram Vijayakrishnan; Gabriele Migliorini; Sara E Dobbins; Amy Holroyd; Dirk Hose; Brian A Walker; Faith E Davies; Walter A Gregory; Graham H Jackson; Julie A Irving; Guy Pratt; Chris Fegan; James Al Fenton; Kai Neben; Per Hoffmann; Markus M Nöthen; Thomas W Mühleisen; Lewin Eisele; Fiona M Ross; Christian Straka; Hermann Einsele; Christian Langer; Elisabeth Dörner; James M Allan; Anna Jauch; Gareth J Morgan; Kari Hemminki; Richard S Houlston; Hartmut Goldschmidt
Journal:  Nat Genet       Date:  2013-08-18       Impact factor: 38.330

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  53 in total

1.  [Leukocyte count of puerperal sows].

Authors:  D Mäde; G Wujanz
Journal:  Berl Munch Tierarztl Wochenschr       Date:  1996-09       Impact factor: 0.328

2.  Genetic variations associated with telomere length confer risk of gastric cardia adenocarcinoma.

Authors:  Nasha Zhang; Yan Zheng; Jie Liu; Tiansui Lei; Yeyang Xu; Ming Yang
Journal:  Gastric Cancer       Date:  2019-03-21       Impact factor: 7.370

3.  Assessing thyroid cancer risk using polygenic risk scores.

Authors:  Sandya Liyanarachchi; Julius Gudmundsson; Egil Ferkingstad; Huiling He; Jon G Jonasson; Vinicius Tragante; Folkert W Asselbergs; Li Xu; Lambertus A Kiemeney; Romana T Netea-Maier; Jose I Mayordomo; Theo S Plantinga; Hannes Hjartarson; Jon Hrafnkelsson; Erich M Sturgis; Pamela Brock; Fadi Nabhan; Gudmar Thorleifsson; Matthew D Ringel; Kari Stefansson; Albert de la Chapelle
Journal:  Proc Natl Acad Sci U S A       Date:  2020-03-04       Impact factor: 11.205

4.  A Truncating Germline Mutation of TINF2 in Individuals with Thyroid Cancer or Melanoma Results in Longer Telomeres.

Authors:  Huiling He; Wei Li; Daniel F Comiskey; Sandya Liyanarachchi; Taina T Nieminen; Yanqiang Wang; Katherine E DeLap; Pamela Brock; Albert de la Chapelle
Journal:  Thyroid       Date:  2020-02       Impact factor: 6.568

5.  The Role of NRG1 in the Predisposition to Papillary Thyroid Carcinoma.

Authors:  Huiling He; Wei Li; Sandya Liyanarachchi; Yanqiang Wang; Lianbo Yu; Luke K Genutis; Sophia Maharry; John E Phay; Rulong Shen; Pamela Brock; Albert de la Chapelle
Journal:  J Clin Endocrinol Metab       Date:  2018-04-01       Impact factor: 5.958

6.  Risk Haplotypes Uniquely Associated with Radioiodine-Refractory Thyroid Cancer Patients of High African Ancestry.

Authors:  Zachary Hurst; Sandya Liyanarachchi; Huiling He; Pamela Brock; Jennifer Sipos; Fadi Nabhan; Electron Kebebew; Patience Green; Gilbert J Cote; Steven Sherman; Christopher J Walker; Yi Seok Chang; Shuai Xue; Brynn Hollingsworth; Wei Li; Luke Genutis; Eric Menq; Albert de la Chapelle; Sissy M Jhiang
Journal:  Thyroid       Date:  2019-02-13       Impact factor: 6.568

7.  Genetic Characterization and Prognostic Relevance of Acquired Uniparental Disomies in Cytogenetically Normal Acute Myeloid Leukemia.

Authors:  Christopher J Walker; Jessica Kohlschmidt; Ann-Kathrin Eisfeld; Krzysztof Mrózek; Sandya Liyanarachchi; Chi Song; Deedra Nicolet; James S Blachly; Marius Bill; Dimitrios Papaioannou; Christopher C Oakes; Brian Giacopelli; Luke K Genutis; Sophia E Maharry; Shelley Orwick; Kellie J Archer; Bayard L Powell; Jonathan E Kolitz; Geoffrey L Uy; Eunice S Wang; Andrew J Carroll; Richard M Stone; John C Byrd; Albert de la Chapelle; Clara D Bloomfield
Journal:  Clin Cancer Res       Date:  2019-08-02       Impact factor: 12.531

8.  Fine mapping of 14q13 reveals novel variants associated with different histological subtypes of papillary thyroid carcinoma.

Authors:  Jarosław Jendrzejewski; Sandya Liyanarachchi; Andrew Eiterman; Andrew Thomas; Huiling He; Rebecca Nagy; Leigha Senter; Krzysztof Sworczak; Albert de la Chapelle
Journal:  Int J Cancer       Date:  2018-12-03       Impact factor: 7.396

Review 9.  Genome-Wide Association Studies in Glioma.

Authors:  Ben Kinnersley; Richard S Houlston; Melissa L Bondy
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2018-01-30       Impact factor: 4.254

10.  Mismatch repair single nucleotide polymorphisms and thyroid cancer susceptibility.

Authors:  Luís S Santos; Susana N Silva; Octávia M Gil; Teresa C Ferreira; Edward Limbert; José Rueff
Journal:  Oncol Lett       Date:  2018-02-21       Impact factor: 2.967

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