Literature DB >> 28188520

Proteome Characterization of a Chromatin Locus Using the Proteomics of Isolated Chromatin Segments Approach.

Sophie L Kan1, Nehmé Saksouk1, Jérome Déjardin2.   

Abstract

The biological functions of given genomic regions are ruled by the local chromatin composition. The Proteomics of Isolated Chromatin segments approach (PICh) is a powerful and unbiased method to analyze the composition of chosen chromatin segments, provided they are abundant (repeated) or that the organism studied has a small genome. PICh can be used to identify novel and unexpected regulatory factors, or when combined with quantitative mass spectrometric approaches, to characterize the function of a defined factor at the chosen locus, by quantifying composition changes at the locus upon removal/addition of that factor.

Keywords:  Chromatin; Heterochromatin; Protein Purification; Proteomics; Repeated Sequences; Telomeres

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Year:  2017        PMID: 28188520     DOI: 10.1007/978-1-4939-6747-6_3

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  2 in total

1.  Epi-Decoder: Decoding the Local Proteome of a Genomic Locus by Massive Parallel Chromatin Immunoprecipitation Combined with DNA-Barcode Sequencing.

Authors:  Maria Elize van Breugel; Fred van Leeuwen
Journal:  Methods Mol Biol       Date:  2022

2.  Decoding the chromatin proteome of a single genomic locus by DNA sequencing.

Authors:  Tessy Korthout; Deepani W Poramba-Liyanage; Ila van Kruijsbergen; Kitty F Verzijlbergen; Frank P A van Gemert; Tibor van Welsem; Fred van Leeuwen
Journal:  PLoS Biol       Date:  2018-07-13       Impact factor: 8.029

  2 in total

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