Literature DB >> 28188372

Complete nucleotide sequence and genome organization of peach virus D, a putative new member of the genus Marafivirus.

Davaajargal Igori1,2, Seungmo Lim1,2, Dasom Baek1,2, San Yeong Kim3, Euncheol Seo3, In-Sook Cho4, Gug-Seoun Choi4, Hyoun-Sub Lim5, Jae Sun Moon6,7.   

Abstract

The complete nucleotide sequence of peach virus D (PeVD) from Prunus persica was determined. The PeVD genome consists of 6,612 nucleotides excluding the 3' poly(A) tail and contains a single open reading frame coding for a polyprotein of 227 kDa. Sequence comparisons and phylogenetic analysis revealed that PeVD is most closely related to viruses in the genus Marafivirus, family Tymoviridae. The complete nucleotide and CP amino acid sequences of PeVD were most similar (51.1-57.8% and 32.2-48.0%, respectively) to members of the genus Marafivirus, suggesting that PeVD is a new member of this genus.

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Year:  2017        PMID: 28188372     DOI: 10.1007/s00705-017-3255-y

Source DB:  PubMed          Journal:  Arch Virol        ISSN: 0304-8608            Impact factor:   2.574


  3 in total

1.  Molecular Characterization of a Novel Species of Capillovirus from Japanese Apricot (Prunus mume).

Authors:  Armelle Marais; Chantal Faure; Sébastien Theil; Thierry Candresse
Journal:  Viruses       Date:  2018-03-23       Impact factor: 5.048

Review 2.  Recent Advances on Detection and Characterization of Fruit Tree Viruses Using High-Throughput Sequencing Technologies.

Authors:  Varvara I Maliogka; Angelantonio Minafra; Pasquale Saldarelli; Ana B Ruiz-García; Miroslav Glasa; Nikolaos Katis; Antonio Olmos
Journal:  Viruses       Date:  2018-08-17       Impact factor: 5.048

3.  Peach RNA viromes in six different peach cultivars.

Authors:  Yeonhwa Jo; Sen Lian; Hyosub Chu; Jin Kyong Cho; Su-Hyun Yoo; Hoseong Choi; Ju-Yeon Yoon; Seung-Kook Choi; Bong Choon Lee; Won Kyong Cho
Journal:  Sci Rep       Date:  2018-01-30       Impact factor: 4.379

  3 in total

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