Literature DB >> 28179142

RNA-seq in kinetoplastids: A powerful tool for the understanding of the biology and host-pathogen interactions.

Luz Helena Patino1, Juan David Ramírez2.   

Abstract

The kinetoplastids include a large number of parasites responsible for serious diseases in humans and animals (Leishmania and Trypanosoma brucei) considered endemic in several regions of the world. These parasites are characterized by digenetic life cycles that undergo morphological and genetic changes that allow them to adapt to different microenvironments on their vertebrates and invertebrates hosts. Recent advances in ´omics´ technology, specifically transcriptomics have allowed to reveal aspects associated with such molecular changes. So far, different techniques have been used to evaluate the gene expression profile during the various stages of the life cycle of these parasites and during the host-parasite interactions. However, some of them have serious drawbacks that limit the precise study and full understanding of their transcriptomes. Therefore, recently has been implemented the latest technology (RNA-seq), which overcomes the drawbacks of traditional methods. In this review, studies that so far have used RNA-seq are presented and allowed to expand our knowledge regarding the biology of these parasites and their interactions with their hosts.
Copyright © 2017 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Microarrays; RNA-seq; Transcriptome; Transcriptomics

Mesh:

Substances:

Year:  2017        PMID: 28179142     DOI: 10.1016/j.meegid.2017.02.003

Source DB:  PubMed          Journal:  Infect Genet Evol        ISSN: 1567-1348            Impact factor:   3.342


  14 in total

1.  Transcriptional analysis of THP-1 cells infected with Leishmania infantum indicates no activation of the inflammasome platform.

Authors:  Mariana Gatto; Patrícia Aparecida Borim; Ivan Rodrigo Wolf; Taís Fukuta da Cruz; Gustavo Augusto Ferreira Mota; Aline Márcia Marques Braz; Bárbara Casella Amorim; Guilherme Targino Valente; Marjorie de Assis Golim; James Venturini; João Pessoa Araújo Junior; Alessandra Pontillo; Alexandrina Sartori
Journal:  PLoS Negl Trop Dis       Date:  2020-01-21

Review 2.  Experimental Strategies to Explore Drug Action and Resistance in Kinetoplastid Parasites.

Authors:  Magali Van den Kerkhof; Yann G-J Sterckx; Philippe Leprohon; Louis Maes; Guy Caljon
Journal:  Microorganisms       Date:  2020-06-24

3.  Complete assembly of the Leishmania donovani (HU3 strain) genome and transcriptome annotation.

Authors:  Esther Camacho; Sandra González-de la Fuente; Alberto Rastrojo; Ramón Peiró-Pastor; Jose Carlos Solana; Laura Tabera; Francisco Gamarro; Fernando Carrasco-Ramiro; Jose M Requena; Begoña Aguado
Journal:  Sci Rep       Date:  2019-04-16       Impact factor: 4.379

4.  Proteins involved in the biosynthesis of lipophosphoglycan in Leishmania: a comparative genomic and evolutionary analysis.

Authors:  Lucas Gentil Azevedo; Artur Trancoso Lopo de Queiroz; Aldina Barral; Luciane Amorim Santos; Pablo Ivan Pereira Ramos
Journal:  Parasit Vectors       Date:  2020-01-30       Impact factor: 3.876

5.  Transcriptome Analysis and Autophagy Investigation of LoVo Cells Stimulated with Exosomes Derived from T. asiatica Adult Worms.

Authors:  Panhong Liang; Yanping Li; Li Mao; Tingli Liu; Shaohua Zhang; Muhammad Ehsan; Liqun Wang; Aimin Guo; Guoliang Chen; Xuenong Luo
Journal:  Microorganisms       Date:  2021-05-05

Review 6.  In Search of Biomarkers for Pathogenesis and Control of Leishmaniasis by Global Analyses of Leishmania-Infected Macrophages.

Authors:  Patricia Sampaio Tavares Veras; Pablo Ivan Pereira Ramos; Juliana Perrone Bezerra de Menezes
Journal:  Front Cell Infect Microbiol       Date:  2018-09-19       Impact factor: 5.293

Review 7.  Biomarkers of Cutaneous Leishmaniasis.

Authors:  Fariborz Bahrami; Ali M Harandi; Sima Rafati
Journal:  Front Cell Infect Microbiol       Date:  2018-06-26       Impact factor: 5.293

8.  A benchmark of hemoglobin blocking during library preparation for mRNA-Sequencing of human blood samples.

Authors:  Florian Uellendahl-Werth; Markus Wolfien; Andre Franke; Olaf Wolkenhauer; David Ellinghaus
Journal:  Sci Rep       Date:  2020-03-27       Impact factor: 4.379

9.  Editorial: Biomarkers in Leishmaniasis.

Authors:  Eugenia Carrillo; Javier Moreno
Journal:  Front Cell Infect Microbiol       Date:  2019-11-12       Impact factor: 5.293

10.  Flax rust infection transcriptomics reveals a transcriptional profile that may be indicative for rust Avr genes.

Authors:  Wenjie Wu; Adnane Nemri; Leila M Blackman; Ann-Maree Catanzariti; Jana Sperschneider; Gregory J Lawrence; Peter N Dodds; David A Jones; Adrienne R Hardham
Journal:  PLoS One       Date:  2019-12-12       Impact factor: 3.240

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