| Literature DB >> 28178340 |
J Guiot1, M Henket1, J L Corhay1, C Moermans1, R Louis1.
Abstract
BACKGROUND: Idiopathic pulmonary fibrosis (IPF) is a rare lung disease of unknown origin leading rapidly to death. This paper addresses the issue of whether sputum induction is a suitable tool to study respiratory tract inflammation and potential biomarkers in IPF compared to COPD, a fibrosing airway wall disease.Entities:
Mesh:
Substances:
Year: 2017 PMID: 28178340 PMCID: PMC5298342 DOI: 10.1371/journal.pone.0171344
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Sequence of primers and probes.
| Gene name | Accession number | sequence | |
|---|---|---|---|
| NM 000597.2 | Forward | ||
| reverse | |||
| Probe | |||
| NM 000660.6 | Forward | ||
| reverse | |||
| Probe | |||
| NM 002423.4 | Forward | ||
| reverse | |||
| Probe | |||
| NM 000600.4 | Forward | ||
| reverse | |||
| Probe | |||
| NM 000584.3 | Forward | ||
| reverse | |||
| Probe | |||
| NM 001276.2 | Forward | ||
| reverse | |||
| Probe | |||
| NM 000594.3 | Forward | ||
| reverse | |||
| Probe | |||
| x03205.1 | Forward | ||
| reverse | |||
| Probe |
Primers and probes for 18S rRNA, IL-6 and IL-8 were designed by Gielen and al (22).
PrimeTime® qPCR Assays provided by IDT (Integrated DNA Technologies, Inc., Coralville, IA) were used for IGFBP-2, MMP-7, TNF-α, TGF-β and YKL-40.
Subject characteristics.
| Healthy subjects (n = 30) | COPD (n = 32) | IPF (n = 15) | |
|---|---|---|---|
| 55(9) | 63(9) | 72(9) | |
| 11/19 | 24/8 | 12/3 | |
| 169(8) | 171(9) | 170(12) | |
| 72(12) | 71(17) | 76(13) | |
| 25(3) | 24(4) | 26(3) | |
| 13/8/9 | 1/17/14 | 2/10/3 | |
| 9(13) | 47(32) | 33(24) | |
| 111(11) | 49(16) | 69(15) | |
| 114(15) | 81(14) | 69(16) | |
| 80(4) | 48(10) | 76(11) | |
| nd | 115(19) | 68(14) | |
| nd | 192(58) | 65(49) | |
| nd | 56(14) | 36(16) | |
| nd | 76(20) | 59(16) | |
| 0/30 | 12/20 | 3/12 | |
| 0/30 | 2/30 | 2/13 |
Data are expressed as mean (SD).
* p < 0.05 compared to healthy subjects.
** p < 0.001 compared to healthy subjects.
*** p < 0.0001 compared to healthy subjects.
° p < 0.05 compared to COPD.
°° p < 0.001 compared to COPD.
°°° p < 0.0001 compared to COPD.
FEV1: forced expiratory volume in one second; FVC: forced vital capacity; TLC: total lung capacity; RV: residual volume; DLCO: diffusion capacity of CO in the lung; ICS: inhaled corticosteroid; OCS: oral corticosteroid.
Sputum cell counts.
Results are expressed as median (min-max).
* p < 0.05 compared to healthy subjects.
** p < 0.001 compared to healthy subjects.
*** p < 0.0001 compared to healthy subjects.
Sputum supernatant biomarkers.
| Healthy subjects | COPD | IPF | |
|---|---|---|---|
| 0(0–0) | 0(0–0) | 0(0–17) | |
| 0(0–20) | 0(0–39) | 0(0–24) | |
| 0(0–0) | 0(0–0) | 0(0–1) | |
| 30(0–120) | 49(0–257) | 59(3–693) | |
| 167(24–1060) | 196(53–1349) | 222(109–786) | |
| 46(0–381) | 170(0–3287) | 276(46–3083) | |
| 0(0–38) | 16(0–60) | 32(0–88) | |
| 23(3–216) | 60(20–3113) | 29(8–459) | |
| 0(0–453,2) | 0(0–496,3) | 0(0–1283,5) | |
| 6,8(2–24,4) | 14(2–489) | 10(2–88) | |
| 20(2–93) | 17(3–195) | 46(0.008–190) | |
| 70(10–471) | 264(31–969) | 415(18–970) | |
| 8(0.8–33) | 16(0.6–224) | 15(0.002–204) | |
| 23(4–292) | 44(4–975) | 140(16–448) |
Results are expressed as median (min-max).
* p < 0.05 compared to healthy subjects.
** p < 0.001 compared to healthy subjects.
*** p < 0.0001 compared to healthy subjects.
° p < 0.05 compared to COPD.
°° p < 0.001 compared to COPD.
°°° p < 0.0001 compared to COPD.
Fig 1Protein and gene levels of IGFBP-2, IL-8 and MMP-7 in sputum of IPF patients.
a) IGFBP-2 level in supernatant showing a significant increase in IPF compared to HS. b) Sputum cell gene expression of IGFBP-2 showing a significant increase in IPF patients compared to COPD and HS. c) IL-8 level in supernatant showing a significant increase in COPD and IPF compared to HS. d) Sputum cell gene expression of IL-8 showing a significant increase in IPF compared to COPD and HS. e) MMP-7 level in supernatant showing a significant increase in COPD and IPF compared to HS. f) Sputum cell gene expression of MMP-7 showing a significant increase in IPF compared to COPD and HS.
Sputum cell gene expression.
| COPD | IPF | HS vs IPF | HS vs COPD | COPD vs IPF | |
|---|---|---|---|---|---|
| fold change | fold change | p value | p value | p value | |
| 0.91 | 13.70 | 0,0385 | ns | 0,0011 | |
| 4.67 | 24.88 | 0,0042 | ns | 0,0478 | |
| 2.78 | 15.53 | 0,0193 | ns | 0,0037 | |
| 0.35 | 70.43 | <0,0001 | ns | <0,0001 | |
| 0.62 | 5.02 | ns | ns | 0,0005 | |
| 1.15 | 2.53 | ns | ns | ns | |
| 0.5 | 5.65 | ns | ns | 0,0011 |
Data are presented as fold change relative expression to healthy subjects group. COPD: chronic obstructive pulmonary disease (n = 15); IPF: idiopathic pulmonary fibrosis (n = 12), HS: healthy subjects (n = 14).
Fig 2Correlation between MMP-7 and KL-6 and TLC (% pred) in IPF. a) Correlation between level of MMP-7 (ELISA) in supernatant of IPF patients and total lung capacity (TLC)(%predicted). b) Correlation between level of KL-6 (ELISA) in supernatant of IPF and TLC (%predicted).