Literature DB >> 28177778

Linker histones: novel insights into structure-specific recognition of the nucleosome.

Amber R Cutter1,1, Jeffrey J Hayes1,1.   

Abstract

Linker histones (H1s) are a primary component of metazoan chromatin, fulfilling numerous functions, both in vitro and in vivo, including stabilizing the wrapping of DNA around the nucleosome, promoting folding and assembly of higher order chromatin structures, influencing nucleosome spacing on DNA, and regulating specific gene expression. However, many molecular details of how H1 binds to nucleosomes and recognizes unique structural features on the nucleosome surface remain undefined. Numerous, confounding studies are complicated not only by experimental limitations, but the use of different linker histone isoforms and nucleosome constructions. This review summarizes the decades of research that has resulted in several models of H1 association with nucleosomes, with a focus on recent advances that suggest multiple modes of H1 interaction in chromatin, while highlighting the remaining questions.

Entities:  

Keywords:  ADN; DNA; histone de liaison; linker histone; nucleosome; nucléosome

Mesh:

Substances:

Year:  2016        PMID: 28177778      PMCID: PMC5654525          DOI: 10.1139/bcb-2016-0097

Source DB:  PubMed          Journal:  Biochem Cell Biol        ISSN: 0829-8211            Impact factor:   3.626


  71 in total

1.  Single-base resolution mapping of H1-nucleosome interactions and 3D organization of the nucleosome.

Authors:  Sajad Hussain Syed; Damien Goutte-Gattat; Nils Becker; Sam Meyer; Manu Shubhdarshan Shukla; Jeffrey J Hayes; Ralf Everaers; Dimitar Angelov; Jan Bednar; Stefan Dimitrov
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-10       Impact factor: 11.205

2.  EM measurements define the dimensions of the "30-nm" chromatin fiber: evidence for a compact, interdigitated structure.

Authors:  Philip J J Robinson; Louise Fairall; Van A T Huynh; Daniela Rhodes
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-14       Impact factor: 11.205

3.  Removal of histone H1 exposes a fifty base pair DNA segment between nucleosomes.

Authors:  J P Whitlock; R T Simpson
Journal:  Biochemistry       Date:  1976-07-27       Impact factor: 3.162

Review 4.  Where is the globular domain of linker histone located on the nucleosome?

Authors:  C Crane-Robinson
Journal:  Trends Biochem Sci       Date:  1997-03       Impact factor: 13.807

5.  Nucleosome interaction surface of linker histone H1c is distinct from that of H1(0).

Authors:  Eric M George; Tina Izard; Stephen D Anderson; David T Brown
Journal:  J Biol Chem       Date:  2010-05-05       Impact factor: 5.157

6.  Thymine dimer formation as a probe of the path of DNA in and between nucleosomes in intact chromatin.

Authors:  J R Pehrson
Journal:  Proc Natl Acad Sci U S A       Date:  1989-12       Impact factor: 11.205

7.  Salt-dependent co-operative interaction of histone H1 with linear DNA.

Authors:  D J Clark; J O Thomas
Journal:  J Mol Biol       Date:  1986-02-20       Impact factor: 5.469

8.  Footprinting of linker histones H5 and H1 on the nucleosome.

Authors:  D Z Staynov; C Crane-Robinson
Journal:  EMBO J       Date:  1988-12-01       Impact factor: 11.598

9.  Linker histone H1.0 interacts with an extensive network of proteins found in the nucleolus.

Authors:  Anna A Kalashnikova; Duane D Winkler; Steven J McBryant; Ryan K Henderson; Jacob A Herman; Jennifer G DeLuca; Karolin Luger; Jessica E Prenni; Jeffrey C Hansen
Journal:  Nucleic Acids Res       Date:  2013-02-21       Impact factor: 16.971

10.  Photobleaching studies reveal that a single amino acid polymorphism is responsible for the differential binding affinities of linker histone subtypes H1.1 and H1.5.

Authors:  Thomas W Flanagan; Jacob K Files; Kelsey Rose Casano; Eric M George; David T Brown
Journal:  Biol Open       Date:  2016-02-24       Impact factor: 2.422

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  12 in total

1.  A nucleosome-free region locally abrogates histone H1-dependent restriction of linker DNA accessibility in chromatin.

Authors:  Laxmi Narayan Mishra; Jeffrey J Hayes
Journal:  J Biol Chem       Date:  2018-10-29       Impact factor: 5.157

2.  Elucidating the influence of linker histone variants on chromatosome dynamics and energetics.

Authors:  Dustin C Woods; Jeff Wereszczynski
Journal:  Nucleic Acids Res       Date:  2020-04-17       Impact factor: 16.971

Review 3.  Unraveling linker histone interactions in nucleosomes.

Authors:  Fanfan Hao; Seyit Kale; Stefan Dimitrov; Jeffrey J Hayes
Journal:  Curr Opin Struct Biol       Date:  2021-07-08       Impact factor: 6.809

4.  The Histone H1-Like Protein AlgP Facilitates Even Spacing of Polyphosphate Granules in Pseudomonas aeruginosa.

Authors:  Ravi Chawla; Steven Klupt; Vadim Patsalo; James R Williamson; Lisa R Racki
Journal:  mBio       Date:  2022-04-18       Impact factor: 7.786

Review 5.  Epichromatin and chromomeres: a 'fuzzy' perspective.

Authors:  Donald E Olins; Ada L Olins
Journal:  Open Biol       Date:  2018-06       Impact factor: 6.411

6.  Linker histone epitopes are hidden by in situ higher-order chromatin structure.

Authors:  Vladimir B Teif; Travis J Gould; Christopher T Clarkson; Logan Boyd; Enoch B Antwi; Naveed Ishaque; Ada L Olins; Donald E Olins
Journal:  Epigenetics Chromatin       Date:  2020-06-06       Impact factor: 4.954

Review 7.  Structure and function of archaeal histones.

Authors:  Bram Henneman; Clara van Emmerik; Hugo van Ingen; Remus T Dame
Journal:  PLoS Genet       Date:  2018-09-13       Impact factor: 5.917

8.  Sensitive effect of linker histone binding mode and subtype on chromatin condensation.

Authors:  Ognjen Perišić; Stephanie Portillo-Ledesma; Tamar Schlick
Journal:  Nucleic Acids Res       Date:  2019-06-04       Impact factor: 16.971

9.  Targeting Chromatin Remodeling for Cancer Therapy.

Authors:  Jasmine Kaur; Abdelkader Daoud; Scott T Eblen
Journal:  Curr Mol Pharmacol       Date:  2019       Impact factor: 3.339

10.  HMGN1 and 2 remodel core and linker histone tail domains within chromatin.

Authors:  Kevin J Murphy; Amber R Cutter; He Fang; Yuri V Postnikov; Michael Bustin; Jeffrey J Hayes
Journal:  Nucleic Acids Res       Date:  2017-09-29       Impact factor: 16.971

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