Literature DB >> 28170251

Averaged Condensed Phase Model for Simulating Molecules in Complex Environments.

Dominique Nocito1, Gregory J O Beran1.   

Abstract

The need for configurational sampling dramatically increases the cost of combined quantum mechanics/molecular mechanics (QM/MM) simulations of chemical processes in solution. We developed an averaged condensed phase environment (ACPE) model that constructs an effective polarizable environment directly from explicitly sampled molecular dynamics configurations via the K-means++ algorithm and a mathematically rigorous translation of the molecular mechanics parameters. The model captures detailed heterogeneous features in the environment that may be difficult to describe using a conventional polarizable continuum model. Instead of performing repeated QM/MM calculations for each new configuration of the environment, the ACPE approach allows one to perform a single QM calculation on an averaged configuration. Here, we demonstrate the model by computing electronic excitation energies for several small molecules in solution. The ACPE model predicts the excitation energies in excellent agreement with conventional configurational averaging yet with orders of magnitude of reduction in the computational cost.

Year:  2017        PMID: 28170251     DOI: 10.1021/acs.jctc.6b00890

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  3 in total

1.  Solvation Free Energy Calculations with Quantum Mechanics/Molecular Mechanics and Machine Learning Models.

Authors:  Pan Zhang; Lin Shen; Weitao Yang
Journal:  J Phys Chem B       Date:  2019-01-15       Impact factor: 2.991

2.  A simplified charge projection scheme for long-range electrostatics in ab initio QM/MM calculations.

Authors:  Xiaoliang Pan; Kwangho Nam; Evgeny Epifanovsky; Andrew C Simmonett; Edina Rosta; Yihan Shao
Journal:  J Chem Phys       Date:  2021-01-14       Impact factor: 3.488

3.  Quantum Chemical Microsolvation by Automated Water Placement.

Authors:  Miguel Steiner; Tanja Holzknecht; Michael Schauperl; Maren Podewitz
Journal:  Molecules       Date:  2021-03-23       Impact factor: 4.411

  3 in total

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