Literature DB >> 28166218

Critical role of IRF1 and BATF in forming chromatin landscape during type 1 regulatory cell differentiation.

Katarzyna Karwacz1, Emily R Miraldi2,3, Maria Pokrovskii3, Asaf Madi1, Nir Yosef4, Ivo Wortman5, Xi Chen6, Aaron Watters2, Nicholas Carriero2, Amit Awasthi7, Aviv Regev5, Richard Bonneau2,6, Dan Littman3, Vijay K Kuchroo1.   

Abstract

Type 1 regulatory T cells (Tr1 cells) are induced by interleukin-27 (IL-27) and have critical roles in the control of autoimmunity and resolution of inflammation. We found that the transcription factors IRF1 and BATF were induced early on after treatment with IL-27 and were required for the differentiation and function of Tr1 cells in vitro and in vivo. Epigenetic and transcriptional analyses revealed that both transcription factors influenced chromatin accessibility and expression of the genes required for Tr1 cell function. IRF1 and BATF deficiencies uniquely altered the chromatin landscape, suggesting that these factors serve a pioneering function during Tr1 cell differentiation.

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Year:  2017        PMID: 28166218      PMCID: PMC5901650          DOI: 10.1038/ni.3683

Source DB:  PubMed          Journal:  Nat Immunol        ISSN: 1529-2908            Impact factor:   25.606


  44 in total

1.  Distal enhancer elements transcribe intergenic RNA in the IL-10 family gene cluster.

Authors:  Elizabeth A Jones; Richard A Flavell
Journal:  J Immunol       Date:  2005-12-01       Impact factor: 5.422

2.  A distal cis-regulatory element, CNS-9, controls NFAT1 and IRF4-mediated IL-10 gene activation in T helper cells.

Authors:  Choong-Gu Lee; Kyu-Ho Kang; Jae-Seon So; Ho-Keun Kwon; Jun-Seock Son; Min-Kyung Song; Anupama Sahoo; Hwa-Joong Yi; Ki-Chul Hwang; Toshifumi Matsuyama; Katsuyuki Yui; Sin-Hyeog Im
Journal:  Mol Immunol       Date:  2008-10-28       Impact factor: 4.407

3.  Fast gapped-read alignment with Bowtie 2.

Authors:  Ben Langmead; Steven L Salzberg
Journal:  Nat Methods       Date:  2012-03-04       Impact factor: 28.547

4.  IL-27 induces the differentiation of Tr1-like cells from human naive CD4+ T cells via the phosphorylation of STAT1 and STAT3.

Authors:  Hui Wang; Rui Meng; Zitao Li; Binyan Yang; Yun Liu; Fengyu Huang; Jianping Zhang; Hui Chen; Changyou Wu
Journal:  Immunol Lett       Date:  2010-11-27       Impact factor: 3.685

5.  Egr-2 transcription factor is required for Blimp-1-mediated IL-10 production in IL-27-stimulated CD4+ T cells.

Authors:  Yukiko Iwasaki; Keishi Fujio; Tomohisa Okamura; Atsushi Yanai; Shuji Sumitomo; Hirofumi Shoda; Tomohiko Tamura; Hiroki Yoshida; Patrick Charnay; Kazuhiko Yamamoto
Journal:  Eur J Immunol       Date:  2013-02-26       Impact factor: 5.532

6.  A genomic regulatory element that directs assembly and function of immune-specific AP-1-IRF complexes.

Authors:  Elke Glasmacher; Smita Agrawal; Abraham B Chang; Theresa L Murphy; Wenwen Zeng; Bryan Vander Lugt; Aly A Khan; Maria Ciofani; Chauncey J Spooner; Sascha Rutz; Jason Hackney; Roza Nurieva; Carlos R Escalante; Wenjun Ouyang; Dan R Littman; Kenneth M Murphy; Harinder Singh
Journal:  Science       Date:  2012-09-13       Impact factor: 47.728

Review 7.  Interleukin-10: new perspectives on an old cytokine.

Authors:  David M Mosser; Xia Zhang
Journal:  Immunol Rev       Date:  2008-12       Impact factor: 12.988

8.  HTSeq--a Python framework to work with high-throughput sequencing data.

Authors:  Simon Anders; Paul Theodor Pyl; Wolfgang Huber
Journal:  Bioinformatics       Date:  2014-09-25       Impact factor: 6.937

Review 9.  Transcriptional and epigenetic regulation of T-helper lineage specification.

Authors:  Subhash K Tripathi; Riitta Lahesmaa
Journal:  Immunol Rev       Date:  2014-09       Impact factor: 12.988

10.  TFClass: an expandable hierarchical classification of human transcription factors.

Authors:  Edgar Wingender; Torsten Schoeps; Jürgen Dönitz
Journal:  Nucleic Acids Res       Date:  2012-11-24       Impact factor: 16.971

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  50 in total

1.  Competitive binding of STATs to receptor phospho-Tyr motifs accounts for altered cytokine responses.

Authors:  Stephan Wilmes; Polly-Anne Jeffrey; Jonathan Martinez-Fabregas; Maximillian Hafer; Paul K Fyfe; Elizabeth Pohler; Silvia Gaggero; Martín López-García; Grant Lythe; Charles Taylor; Thomas Guerrier; David Launay; Suman Mitra; Jacob Piehler; Carmen Molina-París; Ignacio Moraga
Journal:  Elife       Date:  2021-04-19       Impact factor: 8.140

2.  IRF1 and BATF-transcription factors that set the epigenetic landscape for Tr1 cell differentiation?

Authors:  Katarina Stanko; Birgit Sawitzki
Journal:  Cell Mol Immunol       Date:  2017-07-10       Impact factor: 11.530

3.  IRF1 and BATF: key drivers of type 1 regulatory T-cell differentiation.

Authors:  Sophia Giang; Antonio La Cava
Journal:  Cell Mol Immunol       Date:  2017-06-19       Impact factor: 11.530

4.  IRFs as competing pioneers in T-cell differentiation.

Authors:  Andrea Kröger
Journal:  Cell Mol Immunol       Date:  2017-06-19       Impact factor: 11.530

5.  Alternative Activation of Macrophages Is Accompanied by Chromatin Remodeling Associated with Lineage-Dependent DNA Shape Features Flanking PU.1 Motifs.

Authors:  Mei San Tang; Emily R Miraldi; Natasha M Girgis; Richard A Bonneau; P'ng Loke
Journal:  J Immunol       Date:  2020-07-13       Impact factor: 5.422

Review 6.  Cytokines and transcription factors in the differentiation of CD4+ T helper cell subsets and induction of tissue inflammation and autoimmunity.

Authors:  Mathias Pawlak; Allen W Ho; Vijay K Kuchroo
Journal:  Curr Opin Immunol       Date:  2020-10-08       Impact factor: 7.486

7.  The NK cell granule protein NKG7 regulates cytotoxic granule exocytosis and inflammation.

Authors:  Susanna S Ng; Fabian De Labastida Rivera; Juming Yan; Dillon Corvino; Indrajit Das; Ping Zhang; Rachel Kuns; Shashi Bhushan Chauhan; Jiajie Hou; Xian-Yang Li; Teija C M Frame; Benjamin A McEnroe; Eilish Moore; Jinrui Na; Jessica A Engel; Megan S F Soon; Bhawana Singh; Andrew J Kueh; Marco J Herold; Marcela Montes de Oca; Siddharth Sankar Singh; Patrick T Bunn; Amy Roman Aguilera; Mika Casey; Matthias Braun; Nazanin Ghazanfari; Shivangi Wani; Yulin Wang; Fiona H Amante; Chelsea L Edwards; Ashraful Haque; William C Dougall; Om Prakash Singh; Alan G Baxter; Michele W L Teng; Alex Loukas; Norelle L Daly; Nicole Cloonan; Mariapia A Degli-Esposti; Jude Uzonna; William R Heath; Tobias Bald; Siok-Keen Tey; Kyohei Nakamura; Geoffrey R Hill; Rajiv Kumar; Shyam Sundar; Mark J Smyth; Christian R Engwerda
Journal:  Nat Immunol       Date:  2020-08-24       Impact factor: 25.606

8.  BATF regulates the expression of Nfil3, Wnt10a and miR155hg for efficient induction of antibody class switch recombination in mice.

Authors:  Rosemary E Morman; Patrick G Schweickert; Stephen F Konieczny; Elizabeth J Taparowsky
Journal:  Eur J Immunol       Date:  2018-06-26       Impact factor: 5.532

Review 9.  Epigenetic and transcriptional mechanisms for the regulation of IL-10.

Authors:  Huiyuan Zhang; Vijay Kuchroo
Journal:  Semin Immunol       Date:  2019-10-30       Impact factor: 11.130

10.  Characterization of Transcriptional Regulatory Networks that Promote and Restrict Identities and Functions of Intestinal Innate Lymphoid Cells.

Authors:  Maria Pokrovskii; Jason A Hall; David E Ochayon; Ren Yi; Natalia S Chaimowitz; Harsha Seelamneni; Nicholas Carriero; Aaron Watters; Stephen N Waggoner; Dan R Littman; Richard Bonneau; Emily R Miraldi
Journal:  Immunity       Date:  2019-07-02       Impact factor: 31.745

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