Literature DB >> 28163980

Histological Image Feature Mining Reveals Emergent Diagnostic Properties for Renal Cancer.

Sonal Kothari1, John H Phan2, Andrew N Young3, May D Wang2.   

Abstract

Computer-aided histological image classification systems are important for making objective and timely cancer diagnostic decisions. These systems use combinations of image features that quantify a variety of image properties. Because researchers tend to validate their diagnostic systems on specific cancer endpoints, it is difficult to predict which image features will perform well given a new cancer endpoint. In this paper, we define a comprehensive set of common image features (consisting of 12 distinct feature subsets) that quantify a variety of image properties. We use a data-mining approach to determine which feature subsets and image properties emerge as part of an "optimal" diagnostic model when applied to specific cancer endpoints. Our goal is to assess the performance of such comprehensive image feature sets for application to a wide variety of diagnostic problems. We perform this study on 12 endpoints including 6 renal tumor subtype endpoints and 6 renal cancer grade endpoints. Keywords-histology, image mining, computer-aided diagnosis.

Entities:  

Year:  2012        PMID: 28163980      PMCID: PMC5287706          DOI: 10.1109/BIBM.2011.112

Source DB:  PubMed          Journal:  Proceedings (IEEE Int Conf Bioinformatics Biomed)        ISSN: 2156-1125


  10 in total

1.  Significance analysis of microarrays applied to the ionizing radiation response.

Authors:  V G Tusher; R Tibshirani; G Chu
Journal:  Proc Natl Acad Sci U S A       Date:  2001-04-17       Impact factor: 11.205

2.  Feature selection based on mutual information: criteria of max-dependency, max-relevance, and min-redundancy.

Authors:  Hanchuan Peng; Fuhui Long; Chris Ding
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2005-08       Impact factor: 6.226

3.  Automatic classification for pathological prostate images based on fractal analysis.

Authors:  Po-Whei Huang; Cheng-Hsiung Lee
Journal:  IEEE Trans Med Imaging       Date:  2009-01-19       Impact factor: 10.048

4.  Automated Renal Cell Carcinoma Subtype Classification Using Morphological, Textural and Wavelets Based Features.

Authors:  Qaiser Chaudry; Syed Hussain Raza; Andrew N Young; May D Wang
Journal:  J Signal Process Syst       Date:  2008-06-21

5.  Automatic batch-invariant color segmentation of histological cancer images.

Authors:  Sonal Kothari; John H Phan; Richard A Moffitt; Todd H Stokes; Shelby E Hassberger; Qaiser Chaudry; Andrew N Young; May D Wang
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2011 Mar-Apr

6.  AUTOMATED CELL COUNTING AND CLUSTER SEGMENTATION USING CONCAVITY DETECTION AND ELLIPSE FITTING TECHNIQUES.

Authors:  Sonal Kothari; Qaiser Chaudry; May D Wang
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2009-08-07

7.  Extraction of informative cell features by segmentation of densely clustered tissue images.

Authors:  Sonal Kothari; Qaiser Chaudry; May D Wang
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2009

8.  Multifeature prostate cancer diagnosis and Gleason grading of histological images.

Authors:  Ali Tabesh; Mikhail Teverovskiy; Ho-Yuen Pang; Vinay P Kumar; David Verbel; Angeliki Kotsianti; Olivier Saidi
Journal:  IEEE Trans Med Imaging       Date:  2007-10       Impact factor: 10.048

9.  Multiwavelet grading of pathological images of prostate.

Authors:  Kourosh Jafari-Khouzani; Hamid Soltanian-Zadeh
Journal:  IEEE Trans Biomed Eng       Date:  2003-06       Impact factor: 4.538

10.  GoMiner: a resource for biological interpretation of genomic and proteomic data.

Authors:  Barry R Zeeberg; Weimin Feng; Geoffrey Wang; May D Wang; Anthony T Fojo; Margot Sunshine; Sudarshan Narasimhan; David W Kane; William C Reinhold; Samir Lababidi; Kimberly J Bussey; Joseph Riss; J Carl Barrett; John N Weinstein
Journal:  Genome Biol       Date:  2003-03-25       Impact factor: 13.583

  10 in total
  5 in total

1.  Integration of Multi-Modal Biomedical Data to Predict Cancer Grade and Patient Survival.

Authors:  John H Phan; Ryan Hoffman; Sonal Kothari; Po-Yen Wu; May D Wang
Journal:  IEEE EMBS Int Conf Biomed Health Inform       Date:  2016-02

Review 2.  Multiscale integration of -omic, imaging, and clinical data in biomedical informatics.

Authors:  John H Phan; Chang F Quo; Chihwen Cheng; May Dongmei Wang
Journal:  IEEE Rev Biomed Eng       Date:  2012

3.  Biological Interpretation of Morphological Patterns in Histopathological Whole-Slide Images.

Authors:  Sonal Kothari; John H Phan; Adeboye O Osunkoya; May D Wang
Journal:  ACM BCB       Date:  2012-10

4.  Exploration of Genomic, Proteomic, and Histopathological Image Data Integration Methods for Clinical Prediction.

Authors:  A Poruthoor; J H Phan; S Kothari; May D Wang
Journal:  IEEE China Summit Int Conf Signal Inf Process       Date:  2013-10-10

5.  Eliminating tissue-fold artifacts in histopathological whole-slide images for improved image-based prediction of cancer grade.

Authors:  Sonal Kothari; John H Phan; May D Wang
Journal:  J Pathol Inform       Date:  2013-08-31
  5 in total

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