Literature DB >> 28163093

Picornaviral polymerase structure, function, and fidelity modulation.

Olve B Peersen1.   

Abstract

Like all positive strand RNA viruses, the picornaviruses replicate their genomes using a virally encoded RNA-dependent RNA polymerase enzyme known as 3Dpol. Over the past decade we have made tremendous advances in our understanding of 3Dpol structure and function, including the discovery of a novel mechanism for closing the active site that allows these viruses to easily fine tune replication fidelity and quasispecies distributions. This review summarizes current knowledge of picornaviral polymerase structure and how the enzyme interacts with RNA and other viral proteins to form stable and processive elongation complexes. The picornaviral RdRPs are among the smallest viral polymerases, but their fundamental molecular mechanism for catalysis appears to be generally applicable as a common feature of all positive strand RNA virus polymerases.
Copyright © 2017 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Picornavirus; Polymerase; Positive strand RNA virus; RNA-dependent RNA polymerase; Structure

Mesh:

Substances:

Year:  2017        PMID: 28163093      PMCID: PMC5476519          DOI: 10.1016/j.virusres.2017.01.026

Source DB:  PubMed          Journal:  Virus Res        ISSN: 0168-1702            Impact factor:   3.303


  92 in total

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2.  Small ubiquitin-like modifying protein isopeptidase assay based on poliovirus RNA polymerase activity.

Authors:  Jamie J Arnold; Alejandro Bernal; Uzo Uche; David E Sterner; Tauseef R Butt; Craig E Cameron; Michael R Mattern
Journal:  Anal Biochem       Date:  2005-11-17       Impact factor: 3.365

3.  The structure of a protein primer-polymerase complex in the initiation of genome replication.

Authors:  Cristina Ferrer-Orta; Armando Arias; Rubén Agudo; Rosa Pérez-Luque; Cristina Escarmís; Esteban Domingo; Nuria Verdaguer
Journal:  EMBO J       Date:  2006-02-02       Impact factor: 11.598

4.  A Polymerase mechanism-based strategy for viral attenuation and vaccine development.

Authors:  Spencer A Weeks; Cheri A Lee; Yan Zhao; Eric D Smidansky; Avery August; Jamie J Arnold; Craig E Cameron
Journal:  J Biol Chem       Date:  2012-08-01       Impact factor: 5.157

5.  Enterovirus 71 VPg uridylation uses a two-molecular mechanism of 3D polymerase.

Authors:  Yuna Sun; Yaxin Wang; Chao Shan; Cheng Chen; Peng Xu; Mohan Song; Honggang Zhou; Cheng Yang; Wenbo Xu; Pei-Yong Shi; Bo Zhang; Zhiyong Lou
Journal:  J Virol       Date:  2012-10-10       Impact factor: 5.103

6.  Accurate structural correlations from maximum likelihood superpositions.

Authors:  Douglas L Theobald; Deborah S Wuttke
Journal:  PLoS Comput Biol       Date:  2008-02       Impact factor: 4.475

7.  Nucleic acid polymerases use a general acid for nucleotidyl transfer.

Authors:  Christian Castro; Eric D Smidansky; Jamie J Arnold; Kenneth R Maksimchuk; Ibrahim Moustafa; Akira Uchida; Matthias Götte; William Konigsberg; Craig E Cameron
Journal:  Nat Struct Mol Biol       Date:  2009-01-18       Impact factor: 15.369

8.  The Phyre2 web portal for protein modeling, prediction and analysis.

Authors:  Lawrence A Kelley; Stefans Mezulis; Christopher M Yates; Mark N Wass; Michael J E Sternberg
Journal:  Nat Protoc       Date:  2015-05-07       Impact factor: 13.491

9.  Structures of coxsackievirus, rhinovirus, and poliovirus polymerase elongation complexes solved by engineering RNA mediated crystal contacts.

Authors:  Peng Gong; Matthew G Kortus; Jay C Nix; Ralph E Davis; Olve B Peersen
Journal:  PLoS One       Date:  2013-05-08       Impact factor: 3.240

10.  Evolution of tertiary structure of viral RNA dependent polymerases.

Authors:  Jiří Černý; Barbora Černá Bolfíková; James J Valdés; Libor Grubhoffer; Daniel Růžek
Journal:  PLoS One       Date:  2014-05-09       Impact factor: 3.240

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  36 in total

1.  An Extended Primer Grip of Picornavirus Polymerase Facilitates Sexual RNA Replication Mechanisms.

Authors:  Brian J Kempf; Colleen L Watkins; Olve B Peersen; David J Barton
Journal:  J Virol       Date:  2020-07-30       Impact factor: 5.103

2.  Rational Control of Poliovirus RNA-Dependent RNA Polymerase Fidelity by Modulating Motif-D Loop Conformational Dynamics.

Authors:  Jingjing Shi; Jacob M Perryman; Xiaorong Yang; Xinran Liu; Derek M Musser; Alyson K Boehr; Ibrahim M Moustafa; Jamie J Arnold; Craig E Cameron; David D Boehr
Journal:  Biochemistry       Date:  2019-08-26       Impact factor: 3.162

Review 3.  Emergency Services of Viral RNAs: Repair and Remodeling.

Authors:  Vadim I Agol; Anatoly P Gmyl
Journal:  Microbiol Mol Biol Rev       Date:  2018-03-14       Impact factor: 11.056

4.  Picornaviral polymerase domain exchanges reveal a modular basis for distinct biochemical activities of viral RNA-dependent RNA polymerases.

Authors:  Colleen L Watkins; Brian J Kempf; Stéphanie Beaucourt; David J Barton; Olve B Peersen
Journal:  J Biol Chem       Date:  2020-06-03       Impact factor: 5.157

5.  Residues within the Foot-and-Mouth Disease Virus 3Dpol Nuclear Localization Signal Affect Polymerase Fidelity.

Authors:  Anna Kloc; Devendra K Rai; Douglas P Gladue; Elizabeth Schafer; Mary Kenney; Elizabeth Rieder
Journal:  J Virol       Date:  2020-08-17       Impact factor: 5.103

6.  Understanding the Mechanism of the Broad-Spectrum Antiviral Activity of Favipiravir (T-705): Key Role of the F1 Motif of the Viral Polymerase.

Authors:  Rana Abdelnabi; Ana Theresa Silveira de Morais; Pieter Leyssen; Isabelle Imbert; Stéphanie Beaucourt; Hervé Blanc; Mathy Froeyen; Marco Vignuzzi; Bruno Canard; Johan Neyts; Leen Delang
Journal:  J Virol       Date:  2017-05-26       Impact factor: 5.103

7.  Attenuation of Foot-and-Mouth Disease Virus by Engineered Viral Polymerase Fidelity.

Authors:  Devendra K Rai; Fayna Diaz-San Segundo; Grace Campagnola; Anna Keith; Elizabeth A Schafer; Anna Kloc; Teresa de Los Santos; Olve Peersen; Elizabeth Rieder
Journal:  J Virol       Date:  2017-07-12       Impact factor: 5.103

Review 8.  CoV-er all the bases: Structural perspectives of SARS-CoV-2 RNA synthesis.

Authors:  Brandon Malone; Elizabeth A Campbell; Seth A Darst
Journal:  Enzymes       Date:  2021-08-23

Review 9.  Visualizing the Nucleotide Addition Cycle of Viral RNA-Dependent RNA Polymerase.

Authors:  Jiqin Wu; Peng Gong
Journal:  Viruses       Date:  2018-01-04       Impact factor: 5.048

10.  Viral polymerases.

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Journal:  Virus Res       Date:  2017-02-08       Impact factor: 3.303

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