| Literature DB >> 28161779 |
Marta Kliber-Jasik1, Małgorzata A Broda2, Anna Maroń3, Joanna Nackiewicz2.
Abstract
The influence of albumin and amino acids (Entities:
Keywords: Aluminum octacarboxyphthalocyanine hydroxide; Amino acid; DFT calculations; Photodynamic therapy; Protein; TD-DFT spectra
Year: 2017 PMID: 28161779 PMCID: PMC5306055 DOI: 10.1007/s00894-017-3222-2
Source DB: PubMed Journal: J Mol Model ISSN: 0948-5023 Impact factor: 1.810
Fig. 1Structure of aluminum octacarboxyphthalocyanine hydroxide [Al(OH)PcOC]
Fig. 2Influence of pH on the UV–vis spectrum of Al(OH)PcOC, concentration of Al(OH)PcOC was 1⋅10−5 mol/dm3, Britton-Robinson buffer solutions were used. In inset the influence of pH on absorbance of Al(OH)PcOC solutions in the Q-band region
Fig. 3The influence of albumin or amino acids on the UV–vis spectrum of Al(OH)PcOC. The concentrations of Al(OH)PcOC, amino acids and albumin were 5 × 10−6 , 2 × 10−3 mol/dm3, and 0.27 mg/ml, respectively
Absorbance values of aluminum octacarboxyphthalocyanine hydroxide [Al(OH)PcOC] and its complexes with albumin or amino acids. Concentrations of Al(OH)PcOC, amino acids and albumin were 5 × 10−6 , 2 × 10−3 mol/dm3, and 0.27 mg/ml, respectively
| Compound | B band (at 360 nm) | Q band (at 691.5 nm) | Vibronic band (at 621.5 nm) |
|---|---|---|---|
| Al(OH)PcOC | 0.519 | 1.229 | 0.210 |
| Al(OH)PcOC + | 0.524 | 1.232 | 0.214 |
| Al(OH)PcOC + | 0.526 | 1.233 (692 nm) | 0.212 (622 nm) |
| Al(OH)PcOC + | 0.525 | 1.234 | 0.214 |
| Al(OH)PcOC + | 0.523 | 1.238 | 0.214 |
| Al(OH)PcOC + glycine | 0.523 | 1.239 | 0.212 |
| Al(OH)PcOC + albumin | 0.529 | 1.244 | 0.215 |
Fig. 4Kinetic curves of photolyzed Al(OH)PcOC and its complexes with albumin or with amino acids (glycine, l-cysteine, l-serine, l-histidine, l-tryptophan) in the phosphate buffer (pH 8.0) with exposure to red light-685 nm; ZnPcOC and Al(OH)PcOC concentration = 5 × 10−6 mol/dm3; albumin concentration = 0.27 mg/ml; concentration of amino acids =2 × 10−3 mol/dm3; measurements at λmax = 691.5 nm for Al(OH)PcOC and λmax = 688 nm for ZnPcOC
Values of k e (effective reaction rate constant) for Al(OH)PcOC and complexes of Al(OH)PcOC with amino acids or albumin. Concentrations of Al(OH)PcOC, amino acids and albumin were 5 × 10−6 , 2 × 10−3 mol/dm3, and 0.27 mg/ml, respectively
| Compound |
| |
|---|---|---|
| Red light (685 nm)-irradiation | Daylight-irradiation | |
| Al(OH)PcOC | 6.06 | 0.16 |
| Al(OH)PcOC + | 4.93 | 0.11 |
| Al(OH)PcOC + glycine | 4.89 | 0.09 |
| Al(OH)PcOC + | 4.32 | 0.07 |
| Al(OH)PcOC + | 0.84 | 0.07 |
| Al(OH)PcOC + | 0.64 | 0.06 |
| Al(OH)PcOC + albumin | 4.34 | 0.07 |
|
| ||
| ZnPcOC | 18.70 | 0.35 |
Fig. 5a,bUV–vis spectra of Al(OH)PcOC solution (pH 8.0) after adding l-cysteine. Concentrations of Al(OH)PcOC, amino acids were 5 × 10−6 and 2 × 10−3 mol/dm3, respectively. a Visible light–685 nm, b daylight
Fig. 6Two types of axial Al(OH)PcOC– l-histidine complexes. Structures obtained at B3LYP/6-31G(d) level
Energies of interactions and selected interatomic distances for axial Al(OH)PcOC:amino acid complexes obtained by B3LYP/6-31G(d) method
| Complex |
| Al–O (OH) length [Ǻ] | Al ⋯O (N) distance [Ǻ] | Al–N length [Ǻ] |
|
|---|---|---|---|---|---|
| Vacuum | |||||
| Al(OH)PcOC | - | 1.736 | - | 2.005 | 0.549 |
| Al(OH)PcOC + glycine | 15.2 | 1.770 | 2.175 | 1.989 | 0.265 |
| Al(OH)PcOC + | 16.3 | 1.771 | 2.151 | 1.989 | 0.255 |
| Al(OH)PcOC + | 18.6 | 1.774 | 2.122 | 1.989 | 0.241 |
| Al(OH)PcOC + | 23.5 | 1.778 | 2.083 | 1.989 | 0.211 |
| 10.5 (N) | 1.770 (N) | 2.336 (N) | 1.988 (N) | 0.245 (N) | |
| Water | |||||
| Al(OH)PcOC | - | 1.747 | - | 2.002 | 0.536 |
| Al(OH)PcOC + glycine | 23.9 | 1.806 | 2.024 | 1.987 | 0.152 |
| Al(OH)PcOC + | 24.6 | 1.801 | 2.020 | 1.987 | 0.152 |
| Al(OH)PcOC + | 24.6 | 1.807 | 2.018 | 1.987 | 0.147 |
| Al(OH)PcOC + | 26.3 | 1.809 | 2.007 | 1.988 | 0.142 |
| 14.7 (N) | 1.800 (N) | 2.202 (N) | 1.987 (N) | 0.160 (N) | |
Fig. 7Structures of two types of equatorial complexes of Al(OH)PcOC with l-histidine calculated by B3LYP/6-31G(d) method. Dotted lines H-bonds
Hydrogen bond energies (kcal mol−1) and their selected distances (Å) for equatorial Al(OH)PcOC–amino acid complexes
| Complex |
| OH⋯O | OH length | O⋯O |
|
|---|---|---|---|---|---|
| With two O-HEO bonds | |||||
| Vacuum | |||||
| Al(OH)PcOC + | 18.7 | 1.680 | 1.005 | 2.685 | 0.548 |
| Al(OH)PcOC + glycine | 18.8 | 1.668 | 1.007 | 2.675 | 0.548 |
| Al(OH)PcOC+ | 19.3 | 1.680 | 1.005 | 2.685 | 0.548 |
| Al(OH)PcOC+ | 18.8 | 1.659 | 1.008 | 2.667 | 0.548 |
| Water | |||||
| Al(OH)PcOC + | 19.4 | 1.674 | 1.006 | 2.679 | 0.538 |
| Al(OH)PcOC + glycine | 19.7 | 1.663 | 1.008 | 2.671 | 0.535 |
| Al(OH)PcOC+ | 19.5 | 1.672 | 1.007 | 2.678 | 0.536 |
| Al(OH)PcOC+ | 19.7 | 1.659 | 1.008 | 2.667 | 0.535 |
| With O-H···N and Cα-H···O/O-H···N bonds | |||||
|
| OH⋯N | OH length | O⋯N |
| |
| Vacuum | |||||
| Al(OH)PcOC + | 13.4 | 1.725 | 1.018 | 2.741 | 0.548 |
| Al(OH)PcOC + glycine | 14.3 | 1.702 | 1.022 | 2.723 | 0.548 |
| Al(OH)PcOC+ | 15.6 | 1.689 | 1.026 | 2.715 | 0.548 |
| Al(OH)PcOC+ | 18.4 | 1.636 | 1.040 | 2.675 | 0.548 |
| 22.3a | 1.749 | 1.011 | 2.711 | 0.548 | |
| Water | |||||
| Al(OH)PcOC + | 14.6 | 1.647 | 1.036 | 2.682 | 0.536 |
| Al(OH)PcOC + glycine | 16.8 | 1.618 | 1.044 | 2.661 | 0.535 |
| Al(OH)PcOC+ | 17.2 | 1.611 | 1.047 | 2.656 | 0.535 |
| Al(OH)PcOC+ | 19.5 | 1.569 | 1.061 | 2.628 | 0.535 |
| 30.2a | 1.652 | 1.033 | 2.664 | 0.535 | |
aThe equatorial complex is stabilized due to the presence of two O-H···N hydrogen bonds formed by the NH2 group and with a nitrogen atom in the l-histidine side chain
Fig. 8UV–Vis spectra of Al(OH)PcOC and its complexes with l-serine in water calculated by the TD-DFT/CAM-B3LYP/6-31G(d) method