| Literature DB >> 28158465 |
Thomas Van Parys1,2,3, Ine Melckenbeeck4, Maarten Houbraken4, Pieter Audenaert3,4, Didier Colle3,4, Mario Pickavet3,4, Piet Demeester3,4, Yves Van de Peer1,2,3,5.
Abstract
Summary: We present a Cytoscape app for the ISMAGS algorithm, which can enumerate all instances of a motif in a graph, making optimal use of the motif’s symmetries to make the search more efficient. The Cytoscape app provides a handy interface for this algorithm, which allows more efficient network analysis. Availability and Implementation: The Cytoscape app for ISMAGS can be freely downloaded from the Cytoscape App store http://apps.cytoscape.org/apps/ismags. Source code and documentation for ISMAGS are available at https://github.com/biointec/ismags. Source code and documentation for the Cytoscape app are available at https://gitlab.psb.ugent.be/thpar/ISMAGS_Cytoscape. Contacts: Pieter.Audenaert@intec.ugent.be or Yves.VanDePeer@psb.vib-ugent.be Supplementary information: Supplementary data are available at Bioinformatics online.Mesh：
Year: 2017 PMID： 28158465 DOI： 10.1093/bioinformatics/btw626
Source DB: PubMed Journal: Bioinformatics ISSN： 1367-4803 Impact factor: 6.937