Literature DB >> 28154501

COMPUTATIONAL METHODS FOR ASYNCHRONOUS BASINS.

Ian H Dinwoodie.   

Abstract

For a Boolean network we consider asynchronous updates and define the exclusive asynchronous basin of attraction for any steady state or cyclic attractor. An algorithm based on commutative algebra is presented to compute the exclusive basin. Finally its use for targeting desirable attractors by selective intervention on network nodes is illustrated with two examples, one cell signalling network and one sensor network measuring human mobility.

Entities:  

Keywords:  Boolean network; asynchronous update; basin of attraction; sensor network; signalling network

Year:  2016        PMID: 28154501      PMCID: PMC5283826          DOI: 10.3934/dcdsb.2016103

Source DB:  PubMed          Journal:  Discrete Continuous Dyn Syst Ser B        ISSN: 1531-3492            Impact factor:   1.327


  26 in total

1.  Modeling mechanistic biological networks: an advanced Boolean approach.

Authors:  T Handorf; E Klipp
Journal:  Bioinformatics       Date:  2011-12-22       Impact factor: 6.937

2.  BoolNet--an R package for generation, reconstruction and analysis of Boolean networks.

Authors:  Christoph Müssel; Martin Hopfensitz; Hans A Kestler
Journal:  Bioinformatics       Date:  2010-04-07       Impact factor: 6.937

3.  Robustness and fragility of Boolean models for genetic regulatory networks.

Authors:  Madalena Chaves; Réka Albert; Eduardo D Sontag
Journal:  J Theor Biol       Date:  2005-03-19       Impact factor: 2.691

4.  Estimation of rest-activity patterns using motion sensors.

Authors:  Tamara L Hayes; Thomas Riley; Misha Pavel; Jeffrey A Kaye
Journal:  Annu Int Conf IEEE Eng Med Biol Soc       Date:  2010

5.  Boolean formalization of genetic control circuits.

Authors:  R Thomas
Journal:  J Theor Biol       Date:  1973-12       Impact factor: 2.691

Review 6.  Wnt signaling function in Alzheimer's disease.

Authors:  G V De Ferrari; N C Inestrosa
Journal:  Brain Res Brain Res Rev       Date:  2000-08

7.  The trajectory of gait speed preceding mild cognitive impairment.

Authors:  Teresa Buracchio; Hiroko H Dodge; Diane Howieson; Dara Wasserman; Jeffrey Kaye
Journal:  Arch Neurol       Date:  2010-08

8.  Dynamics of p53 and NF-κB regulation in response to DNA damage and identification of target proteins suitable for therapeutic intervention.

Authors:  Rainer Poltz; Michael Naumann
Journal:  BMC Syst Biol       Date:  2012-09-15

9.  Modeling stochasticity and variability in gene regulatory networks.

Authors:  David Murrugarra; Alan Veliz-Cuba; Boris Aguilar; Seda Arat; Reinhard Laubenbacher
Journal:  EURASIP J Bioinform Syst Biol       Date:  2012-06-06

10.  Regularity and predictability of human mobility in personal space.

Authors:  Daniel Austin; Robin M Cross; Tamara Hayes; Jeffrey Kaye
Journal:  PLoS One       Date:  2014-02-27       Impact factor: 3.240

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.