Literature DB >> 28154146

On the dynamical structure of calcium oscillations.

James Sneyd1, Jung Min Han2, Liwei Wang3, Jun Chen4, Xueshan Yang2, Akihiko Tanimura5, Michael J Sanderson4, Vivien Kirk2, David I Yule3.   

Abstract

Oscillations in the concentration of free cytosolic Ca2+ are an important and ubiquitous control mechanism in many cell types. It is thus correspondingly important to understand the mechanisms that underlie the control of these oscillations and how their period is determined. We show that Class I Ca2+ oscillations (i.e., oscillations that can occur at a constant concentration of inositol trisphosphate) have a common dynamical structure, irrespective of the oscillation period. This commonality allows the construction of a simple canonical model that incorporates this underlying dynamical behavior. Predictions from the model are tested, and confirmed, in three different cell types, with oscillation periods ranging over an order of magnitude. The model also predicts that Ca2+ oscillation period can be controlled by modulation of the rate of activation by Ca2+ of the inositol trisphosphate receptor. Preliminary experimental evidence consistent with this hypothesis is presented. Our canonical model has a structure similar to, but not identical to, the classic FitzHugh-Nagumo model. The characterization of variables by speed of evolution, as either fast or slow variables, changes over the course of a typical oscillation, leading to a model without globally defined fast and slow variables.

Entities:  

Keywords:  cytosolic calcium concentration modeling, multiple time scales; inositol trisphosphate receptor; mathematical modeling

Mesh:

Substances:

Year:  2017        PMID: 28154146      PMCID: PMC5321031          DOI: 10.1073/pnas.1614613114

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  41 in total

1.  Functional inositol 1,4,5-trisphosphate receptors assembled from concatenated homo- and heteromeric subunits.

Authors:  Kamil J Alzayady; Larry E Wagner; Rahul Chandrasekhar; Alina Monteagudo; Ronald Godiska; Gregory G Tall; Suresh K Joseph; David I Yule
Journal:  J Biol Chem       Date:  2013-08-16       Impact factor: 5.157

2.  Minimal model for signal-induced Ca2+ oscillations and for their frequency encoding through protein phosphorylation.

Authors:  A Goldbeter; G Dupont; M J Berridge
Journal:  Proc Natl Acad Sci U S A       Date:  1990-02       Impact factor: 11.205

3.  Calcium oscillations increase the efficiency and specificity of gene expression.

Authors:  R E Dolmetsch; K Xu; R S Lewis
Journal:  Nature       Date:  1998-04-30       Impact factor: 49.962

4.  Characterization and modeling of Ca2+ oscillations in mouse primary mesothelial cells.

Authors:  László Pecze; Beat Schwaller
Journal:  Biochim Biophys Acta       Date:  2014-12-30

5.  Differential Regulation of Multiple Steps in Inositol 1,4,5-Trisphosphate Signaling by Protein Kinase C Shapes Hormone-stimulated Ca2+ Oscillations.

Authors:  Paula J Bartlett; Walson Metzger; Lawrence D Gaspers; Andrew P Thomas
Journal:  J Biol Chem       Date:  2015-06-15       Impact factor: 5.157

6.  A method for determining the dependence of calcium oscillations on inositol trisphosphate oscillations.

Authors:  J Sneyd; K Tsaneva-Atanasova; V Reznikov; Y Bai; M J Sanderson; D I Yule
Journal:  Proc Natl Acad Sci U S A       Date:  2006-01-30       Impact factor: 11.205

7.  Mode switching is the major mechanism of ligand regulation of InsP3 receptor calcium release channels.

Authors:  Lucian Ionescu; Carl White; King-Ho Cheung; Jianwei Shuai; Ian Parker; John E Pearson; J Kevin Foskett; Don-On Daniel Mak
Journal:  J Gen Physiol       Date:  2007-11-12       Impact factor: 4.086

8.  Use of Fluorescence Resonance Energy Transfer-based Biosensors for the Quantitative Analysis of Inositol 1,4,5-Trisphosphate Dynamics in Calcium Oscillations.

Authors:  Akihiko Tanimura; Takao Morita; Akihiro Nezu; Akiko Shitara; Noboru Hashimoto; Yosuke Tojyo
Journal:  J Biol Chem       Date:  2009-01-21       Impact factor: 5.157

9.  A kinetic model for type I and II IP3R accounting for mode changes.

Authors:  Ivo Siekmann; Larry E Wagner; David Yule; Edmund J Crampin; James Sneyd
Journal:  Biophys J       Date:  2012-08-22       Impact factor: 4.033

10.  The frequency of calcium oscillations induced by 5-HT, ACH, and KCl determine the contraction of smooth muscle cells of intrapulmonary bronchioles.

Authors:  Jose F Perez; Michael J Sanderson
Journal:  J Gen Physiol       Date:  2005-06       Impact factor: 4.086

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  23 in total

1.  Mapping Interpuff Interval Distribution to the Properties of Inositol Trisphosphate Receptors.

Authors:  Pengxing Cao; Martin Falcke; James Sneyd
Journal:  Biophys J       Date:  2017-05-23       Impact factor: 4.033

2.  Ca2+ Release via IP3 Receptors Shapes the Cardiac Ca2+ Transient for Hypertrophic Signaling.

Authors:  Hilary Hunt; Agnė Tilūnaitė; Greg Bass; Christian Soeller; H Llewelyn Roderick; Vijay Rajagopal; Edmund J Crampin
Journal:  Biophys J       Date:  2020-08-13       Impact factor: 4.033

3.  Region-specific proteolysis differentially regulates type 1 inositol 1,4,5-trisphosphate receptor activity.

Authors:  Liwei Wang; Larry E Wagner; Kamil J Alzayady; David I Yule
Journal:  J Biol Chem       Date:  2017-05-19       Impact factor: 5.157

4.  A calcium sensor calcineurin B-like 9 negatively regulates cold tolerance via calcium signaling in Arabidopsis thaliana.

Authors:  Yuanlin Gao; Guozeng Zhang
Journal:  Plant Signal Behav       Date:  2019-01-29

5.  Region-specific proteolysis differentially modulates type 2 and type 3 inositol 1,4,5-trisphosphate receptor activity in models of acute pancreatitis.

Authors:  Liwei Wang; Larry E Wagner; Kamil J Alzayady; David I Yule
Journal:  J Biol Chem       Date:  2018-07-03       Impact factor: 5.157

6.  Calcium Dynamics and Water Transport in Salivary Acinar Cells.

Authors:  James Sneyd; Elias Vera-Sigüenza; John Rugis; Nathan Pages; David I Yule
Journal:  Bull Math Biol       Date:  2021-02-17       Impact factor: 1.758

7.  A Model of [Formula: see text] Dynamics in an Accurate Reconstruction of Parotid Acinar Cells.

Authors:  Nathan Pages; Elías Vera-Sigüenza; John Rugis; Vivien Kirk; David I Yule; James Sneyd
Journal:  Bull Math Biol       Date:  2019-01-14       Impact factor: 1.758

8.  IP3 mediated global Ca2+ signals arise through two temporally and spatially distinct modes of Ca2+ release.

Authors:  Jeffrey T Lock; Ian Parker
Journal:  Elife       Date:  2020-05-12       Impact factor: 8.140

Review 9.  Differential regulation of ion channels function by proteolysis.

Authors:  Liwei Wang; David I Yule
Journal:  Biochim Biophys Acta Mol Cell Res       Date:  2018-07-17       Impact factor: 4.739

Review 10.  Calcium as a signal integrator in developing epithelial tissues.

Authors:  Pavel A Brodskiy; Jeremiah J Zartman
Journal:  Phys Biol       Date:  2018-05-16       Impact factor: 2.583

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