Literature DB >> 28151046

A 3D puzzle approach to building protein-DNA structures.

Deborah M Hinton1.   

Abstract

Despite recent advances in structural analysis, it is still challenging to obtain a high-resolution structure for a complex of RNA polymerase, transcriptional factors, and DNA. However, using biochemical constraints, 3D printed models of available structures, and computer modeling, one can build biologically relevant models of such supramolecular complexes.

Keywords:  3D printing; AsiA; MotA; RNA polymerase; activation; phage; structure

Mesh：

Substances：

Year:  2017        PMID： 28151046      PMCID： PMC5423474          DOI： 10.1080/21541264.2017.1283387

Source DB:  PubMed          Journal:  Transcription        ISSN： 2154-1272


  37 in total

1.  The MotA transcription factor from bacteriophage T4 contains a novel DNA-binding domain: the 'double wing' motif.

Authors:  Ning Li; E Allen Sickmier; Rongguang Zhang; Andrzej Joachimiak; Stephen W White
Journal:  Mol Microbiol       Date:  2002-03       Impact factor: 3.501

Review 2.  Multiple sigma subunits and the partitioning of bacterial transcription space.

Authors:  Tanja M Gruber; Carol A Gross
Journal:  Annu Rev Microbiol       Date:  2003       Impact factor: 15.500

Review 3.  Activating transcription in bacteria.

Authors:  David J Lee; Stephen D Minchin; Stephen J W Busby
Journal:  Annu Rev Microbiol       Date:  2012-06-15       Impact factor: 15.500

4.  Structure of the replication terminus-terminator protein complex as probed by affinity cleavage.

Authors:  K S Pai; D E Bussiere; F Wang; S W White; D Bastia
Journal:  Proc Natl Acad Sci U S A       Date:  1996-10-01       Impact factor: 11.205

5.  Mechanism of bacterial transcription initiation: RNA polymerase - promoter binding, isomerization to initiation-competent open complexes, and initiation of RNA synthesis.

Authors:  Ruth M Saecker; M Thomas Record; Pieter L Dehaseth
Journal:  J Mol Biol       Date:  2011-03-01       Impact factor: 5.469

6.  Solution structure of the transcriptional activation domain of the bacteriophage T4 protein, MotA.

Authors:  N Li; W Zhang; S W White; R W Kriwacki
Journal:  Biochemistry       Date:  2001-04-10       Impact factor: 3.162

7.  Structure of an RNA polymerase II-TFIIB complex and the transcription initiation mechanism.

Authors:  Xin Liu; David A Bushnell; Dong Wang; Guillermo Calero; Roger D Kornberg
Journal:  Science       Date:  2009-11-12       Impact factor: 47.728

8.  The role of DNA shape in protein-DNA recognition.

Authors:  Remo Rohs; Sean M West; Alona Sosinsky; Peng Liu; Richard S Mann; Barry Honig
Journal:  Nature       Date:  2009-10-29       Impact factor: 49.962

Review 9.  Transcriptional control in the prereplicative phase of T4 development.

Authors:  Deborah M Hinton
Journal:  Virol J       Date:  2010-10-28       Impact factor: 4.099

10.  Transcription initiation by mix and match elements: flexibility for polymerase binding to bacterial promoters.

Authors:  India G Hook-Barnard; Deborah M Hinton
Journal:  Gene Regul Syst Bio       Date:  2007
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