Literature DB >> 28150232

UniProt Protein Knowledgebase.

Sangya Pundir1, Maria J Martin2, Claire O'Donovan2.   

Abstract

The Universal Protein Resource (UniProt) is a freely available comprehensive resource for protein sequence and annotation data. UniProt is a collaboration between the European Bioinformatics Institute (EMBL-EBI), the Swiss Institute of Bioinformatics (SIB), and the Protein Information Resource (PIR). Across the three institutes more than 100 people are involved through different tasks such as expert curation, software development, and support.This chapter introduces the functionality and data provided by UniProt. It describes example use cases for which you might come to UniProt and the methods to help you achieve your goals.

Entities:  

Keywords:  Protein data; Protein tools; UniProt

Mesh:

Substances:

Year:  2017        PMID: 28150232      PMCID: PMC5565770          DOI: 10.1007/978-1-4939-6783-4_2

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  5 in total

1.  Finding homologs in amino acid sequences using network BLAST searches.

Authors:  Istvan Ladunga
Journal:  Curr Protoc Bioinformatics       Date:  2009-03

2.  A comprehensive protein-centric ID mapping service for molecular data integration.

Authors:  Hongzhan Huang; Peter B McGarvey; Baris E Suzek; Raja Mazumder; Jian Zhang; Yongxing Chen; Cathy H Wu
Journal:  Bioinformatics       Date:  2011-04-15       Impact factor: 6.937

3.  UniProt Knowledgebase: a hub of integrated protein data.

Authors:  Michele Magrane
Journal:  Database (Oxford)       Date:  2011-03-29       Impact factor: 3.451

4.  Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega.

Authors:  Fabian Sievers; Andreas Wilm; David Dineen; Toby J Gibson; Kevin Karplus; Weizhong Li; Rodrigo Lopez; Hamish McWilliam; Michael Remmert; Johannes Söding; Julie D Thompson; Desmond G Higgins
Journal:  Mol Syst Biol       Date:  2011-10-11       Impact factor: 11.429

5.  UniProt: a hub for protein information.

Authors: 
Journal:  Nucleic Acids Res       Date:  2014-10-27       Impact factor: 16.971

  5 in total
  77 in total

Review 1.  Progress in data interoperability to support computational toxicology and chemical safety evaluation.

Authors:  Sean Watford; Stephen Edwards; Michelle Angrish; Richard S Judson; Katie Paul Friedman
Journal:  Toxicol Appl Pharmacol       Date:  2019-08-09       Impact factor: 4.219

2.  AbRSA: A robust tool for antibody numbering.

Authors:  Lei Li; Shuang Chen; Zhichao Miao; Yang Liu; Xu Liu; Zhi-Xiong Xiao; Yang Cao
Journal:  Protein Sci       Date:  2019-05-11       Impact factor: 6.725

3.  Identification of Moonlighting Proteins in Genomes Using Text Mining Techniques.

Authors:  Aashish Jain; Hareesh Gali; Daisuke Kihara
Journal:  Proteomics       Date:  2018-10-10       Impact factor: 3.984

4.  Quokka: a comprehensive tool for rapid and accurate prediction of kinase family-specific phosphorylation sites in the human proteome.

Authors:  Fuyi Li; Chen Li; Tatiana T Marquez-Lago; André Leier; Tatsuya Akutsu; Anthony W Purcell; A Ian Smith; Trevor Lithgow; Roger J Daly; Jiangning Song; Kuo-Chen Chou
Journal:  Bioinformatics       Date:  2018-12-15       Impact factor: 6.937

5.  Cyanobacteria and Algae in Clouds and Rain in the Area of puy de Dôme, Central France.

Authors:  Kevin P Dillon; Florence Correa; Celine Judon; Martine Sancelme; Donna E Fennell; Anne-Marie Delort; Pierre Amato
Journal:  Appl Environ Microbiol       Date:  2020-12-17       Impact factor: 4.792

6.  Pi-Pi contacts are an overlooked protein feature relevant to phase separation.

Authors:  Robert McCoy Vernon; Paul Andrew Chong; Brian Tsang; Tae Hun Kim; Alaji Bah; Patrick Farber; Hong Lin; Julie Deborah Forman-Kay
Journal:  Elife       Date:  2018-02-09       Impact factor: 8.140

7.  Establishment of the early cilia preassembly protein complex during motile ciliogenesis.

Authors:  Amjad Horani; Alessandro Ustione; Tao Huang; Amy L Firth; Jiehong Pan; Sean P Gunsten; Jeffrey A Haspel; David W Piston; Steven L Brody
Journal:  Proc Natl Acad Sci U S A       Date:  2018-01-22       Impact factor: 11.205

8.  Human erythrocyte band 3 is a host receptor for Plasmodium falciparum glutamic acid-rich protein.

Authors:  Haifa Almukadi; Christopher Schwake; Maima M Kaiser; D C Ghislaine Mayer; James Schiemer; Michael R Baldwin; Shreeya Hegde; Yunzhe Lu; Toshihiko Hanada; Athar H Chishti
Journal:  Blood       Date:  2018-12-13       Impact factor: 22.113

9.  Hypoxia-inducible miR-196a modulates glioblastoma cell proliferation and migration through complex regulation of NRAS.

Authors:  Sonam Takkar; Vikas Sharma; Sourabh Ghosh; Ashish Suri; Chitra Sarkar; Ritu Kulshreshtha
Journal:  Cell Oncol (Dordr)       Date:  2021-01-19       Impact factor: 6.730

10.  Large-scale comparative assessment of computational predictors for lysine post-translational modification sites.

Authors:  Zhen Chen; Xuhan Liu; Fuyi Li; Chen Li; Tatiana Marquez-Lago; André Leier; Tatsuya Akutsu; Geoffrey I Webb; Dakang Xu; Alexander Ian Smith; Lei Li; Kuo-Chen Chou; Jiangning Song
Journal:  Brief Bioinform       Date:  2019-11-27       Impact factor: 11.622

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