Literature DB >> 28143887

Comparative Monomethylarginine Proteomics Suggests that Protein Arginine Methyltransferase 1 (PRMT1) is a Significant Contributor to Arginine Monomethylation in Toxoplasma gondii.

Rama R Yakubu1, Natalie C Silmon de Monerri2, Edward Nieves3,4, Kami Kim5,2,6, Louis M Weiss5,2.   

Abstract

Arginine methylation is a common posttranslational modification found on nuclear and cytoplasmic proteins that has roles in transcriptional regulation, RNA metabolism and DNA repair. The protozoan parasite Toxoplasma gondii has a complex life cycle requiring transcriptional plasticity and has unique transcriptional regulatory pathways. Arginine methylation may play an important part in transcriptional regulation and splicing biology in this organism. The T. gondii genome contains five putative protein arginine methyltransferases (PRMTs), of which PRMT1 is important for cell division and growth. In order to better understand the function(s) of the posttranslational modification monomethyl arginine (MMA) in T. gondii, we performed a proteomic analysis of MMA proteins using affinity purification employing anti-MMA specific antibodies followed by mass spectrometry. The arginine monomethylome of T. gondii contains a large number of RNA binding proteins and multiple ApiAP2 transcription factors, suggesting a role for arginine methylation in RNA biology and transcriptional regulation. Surprisingly, 90% of proteins that are arginine monomethylated were detected as being phosphorylated in a previous phosphoproteomics study which raises the possibility of interplay between MMA and phosphorylation in this organism. Supporting this, a number of kinases are also arginine methylated. Because PRMT1 is thought to be a major PRMT in T. gondii, an organism which lacks a MMA-specific PRMT, we applied comparative proteomics to understand how PRMT1 might contribute to the MMA proteome in T. gondii We identified numerous putative PRMT1 substrates, which include RNA binding proteins, transcriptional regulators (e.g. AP2 transcription factors), and kinases. Together, these data highlight the importance of MMA and PRMT1 in arginine methylation in T. gondii, as a potential regulator of a large number of processes including RNA biology and transcription.
© 2017 by The American Society for Biochemistry and Molecular Biology, Inc.

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Year:  2017        PMID: 28143887      PMCID: PMC5383779          DOI: 10.1074/mcp.M117.066951

Source DB:  PubMed          Journal:  Mol Cell Proteomics        ISSN: 1535-9476            Impact factor:   5.911


  61 in total

1.  A serine-arginine-rich (SR) splicing factor modulates alternative splicing of over a thousand genes in Toxoplasma gondii.

Authors:  Lee M Yeoh; Christopher D Goodman; Nathan E Hall; Giel G van Dooren; Geoffrey I McFadden; Stuart A Ralph
Journal:  Nucleic Acids Res       Date:  2015-04-13       Impact factor: 16.971

2.  Histone-modifying complexes regulate gene expression pertinent to the differentiation of the protozoan parasite Toxoplasma gondii.

Authors:  Nehmé Saksouk; Micah M Bhatti; Sylvie Kieffer; Aaron T Smith; Karine Musset; Jérôme Garin; William J Sullivan; Marie-France Cesbron-Delauw; Mohamed-Ali Hakimi
Journal:  Mol Cell Biol       Date:  2005-12       Impact factor: 4.272

3.  Toxoplasma transcription factor TgAP2XI-5 regulates the expression of genes involved in parasite virulence and host invasion.

Authors:  Robert Walker; Mathieu Gissot; Ludovic Huot; Tchilabalo Dilezitoko Alayi; David Hot; Guillemette Marot; Christine Schaeffer-Reiss; Alain Van Dorsselaer; Kami Kim; Stanislas Tomavo
Journal:  J Biol Chem       Date:  2013-09-10       Impact factor: 5.157

4.  Global Analysis of Palmitoylated Proteins in Toxoplasma gondii.

Authors:  Ian T Foe; Matthew A Child; Jaimeen D Majmudar; Shruthi Krishnamurthy; Wouter A van der Linden; Gary E Ward; Brent R Martin; Matthew Bogyo
Journal:  Cell Host Microbe       Date:  2015-10-14       Impact factor: 21.023

Review 5.  Arginine methylation an emerging regulator of protein function.

Authors:  Mark T Bedford; Stéphane Richard
Journal:  Mol Cell       Date:  2005-04-29       Impact factor: 17.970

6.  Human protein arginine methyltransferases in vivo--distinct properties of eight canonical members of the PRMT family.

Authors:  Frank Herrmann; Peter Pably; Carmen Eckerich; Mark T Bedford; Frank O Fackelmayer
Journal:  J Cell Sci       Date:  2009-02-10       Impact factor: 5.285

7.  Arginine methylation of the cellular nucleic acid binding protein does not affect its subcellular localization but impedes RNA binding.

Authors:  Hung-Ming Wei; Huan-Hsuan Hu; Gia-Yun Chang; Yu-Jen Lee; Yi-Chen Li; Hong-How Chang; Chuan Li
Journal:  FEBS Lett       Date:  2014-04-12       Impact factor: 4.124

8.  The Ubiquitin Proteome of Toxoplasma gondii Reveals Roles for Protein Ubiquitination in Cell-Cycle Transitions.

Authors:  Natalie C Silmon de Monerri; Rama R Yakubu; Allan L Chen; Peter J Bradley; Edward Nieves; Louis M Weiss; Kami Kim
Journal:  Cell Host Microbe       Date:  2015-11-11       Impact factor: 21.023

Review 9.  Protein arginine methylation in mammals: who, what, and why.

Authors:  Mark T Bedford; Steven G Clarke
Journal:  Mol Cell       Date:  2009-01-16       Impact factor: 17.970

10.  Immunoaffinity enrichment and mass spectrometry analysis of protein methylation.

Authors:  Ailan Guo; Hongbo Gu; Jing Zhou; Daniel Mulhern; Yi Wang; Kimberly A Lee; Vicky Yang; Mike Aguiar; Jon Kornhauser; Xiaoying Jia; Jianmin Ren; Sean A Beausoleil; Jeffrey C Silva; Vidyasiri Vemulapalli; Mark T Bedford; Michael J Comb
Journal:  Mol Cell Proteomics       Date:  2013-10-15       Impact factor: 5.911

View more
  10 in total

Review 1.  Post-translational modifications as key regulators of apicomplexan biology: insights from proteome-wide studies.

Authors:  Rama R Yakubu; Louis M Weiss; Natalie C Silmon de Monerri
Journal:  Mol Microbiol       Date:  2017-11-28       Impact factor: 3.501

2.  A Binary Arginine Methylation Switch on Histone H3 Arginine 2 Regulates Its Interaction with WDR5.

Authors:  Benjamin M Lorton; Rajesh K Harijan; Emmanuel S Burgos; Jeffrey B Bonanno; Steven C Almo; David Shechter
Journal:  Biochemistry       Date:  2020-03-31       Impact factor: 3.162

3.  PRMT1 promotes pancreatic cancer growth and predicts poor prognosis.

Authors:  Chao Song; Tianwei Chen; Lan He; Ning Ma; Jian-Ang Li; Ye-Fei Rong; Yuan Fang; Mengmeng Liu; Dong Xie; Wenhui Lou
Journal:  Cell Oncol (Dordr)       Date:  2019-09-13       Impact factor: 6.730

Review 4.  The Methods Employed in Mass Spectrometric Analysis of Posttranslational Modifications (PTMs) and Protein-Protein Interactions (PPIs).

Authors:  Rama R Yakubu; Edward Nieves; Louis M Weiss
Journal:  Adv Exp Med Biol       Date:  2019       Impact factor: 2.622

5.  The Vacuolar Zinc Transporter TgZnT Protects Toxoplasma gondii from Zinc Toxicity.

Authors:  Nathan M Chasen; Andrew J Stasic; Beejan Asady; Isabelle Coppens; Silvia N J Moreno
Journal:  mSphere       Date:  2019-05-22       Impact factor: 4.389

6.  Global Lysine Crotonylation and 2-Hydroxyisobutyrylation in Phenotypically Different Toxoplasma gondii Parasites.

Authors:  Deqi Yin; Ning Jiang; Yue Zhang; Dawei Wang; Xiaoyu Sang; Ying Feng; Rang Chen; Xinyi Wang; Na Yang; Qijun Chen
Journal:  Mol Cell Proteomics       Date:  2019-09-05       Impact factor: 5.911

7.  Proteome-Wide Alterations of Asymmetric Arginine Dimethylation Associated With Pancreatic Ductal Adenocarcinoma Pathogenesis.

Authors:  Meijin Wei; Chaochao Tan; Zhouqin Tang; Yingying Lian; Ying Huang; Yi Chen; Congwei Chen; Wen Zhou; Tao Cai; Jiliang Hu
Journal:  Front Cell Dev Biol       Date:  2020-12-03

8.  Alterations of Asymmetric Dimethylarginine (ADMA)-Containing Protein Profiles Associated with Chronic Pancreatitis Pathogenesis.

Authors:  Chaochao Tan; Yan Xiao; Xiangping Huang; Ling Wu; Ying Huang
Journal:  J Inflamm Res       Date:  2021-12-24

9.  Genome-wide localization of histone variants in Toxoplasma gondii implicates variant exchange in stage-specific gene expression.

Authors:  Sheila C Nardelli; Natalie C Silmon de Monerri; Laura Vanagas; Xiaonan Wang; Zoi Tampaki; William J Sullivan; Sergio O Angel; Kami Kim
Journal:  BMC Genomics       Date:  2022-02-14       Impact factor: 4.547

10.  Independent transcriptomic and proteomic regulation by type I and II protein arginine methyltransferases.

Authors:  Maxim I Maron; Stephanie M Lehman; Sitaram Gayatri; Joseph D DeAngelo; Subray Hegde; Benjamin M Lorton; Yan Sun; Dina L Bai; Simone Sidoli; Varun Gupta; Matthew R Marunde; James R Bone; Zu-Wen Sun; Mark T Bedford; Jeffrey Shabanowitz; Hongshan Chen; Donald F Hunt; David Shechter
Journal:  iScience       Date:  2021-08-11
  10 in total

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