| Literature DB >> 28139316 |
Carina Bielor1, Nina Sopel1, Anja Maier1, Ashley Blau2, Himanshu Sharma2, Tytti Vuorinen3, Bettina Kroß1, Susanne Mittler1, Anna Graser1, Stephanie Mousset1, Volker O Melichar4, Alexander Kiefer4, Theodor Zimmermann4, Rebekka Springel1, Corinna Holzinger1, Sonja Trump1, Stella Taka5, Nikolaos G Papadopoulos6, Scott T Weiss2, Susetta Finotto7.
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Year: 2017 PMID: 28139316 PMCID: PMC5754331 DOI: 10.1016/j.jaci.2016.10.049
Source DB: PubMed Journal: J Allergy Clin Immunol ISSN: 0091-6749 Impact factor: 10.793
Demographic and clinical data of the PreDicta cohorts WP1-UK-ER analyzed
| Asthmatic patients | Control subjects | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Age (y) | Sex | Phenotype | Treatment | Asthma | Skin prick test | FEV1 (%) | Age (y) | Sex | FEV1 (%) | ||
| 201 | 6 | M | V | s + n (S+LTRA) | c | al, ca, g | 126 | 208 | 6 | M | 77 |
| 202 | 6 | M | U | st | p | al, b, g | 80 | 211 | 6 | F | 121 |
| 203 | 5 | F | U | st + ah | p | ca | 101 | 214 | 5 | M | 112 |
| 204 | 6 | M | A | st + n (S) | c | al, am, ca, g, h | 128 | 215 | 4 | M | — |
| 205 | 5 | M | U | st + n (S) | p | / | 102 | 218 | 4 | F | 118 |
| 206 | 5 | F | U | st | c | al | 129 | 219 | 5 | F | 111 |
| 207 | 5 | M | V | st + n (S) | p | g | 143 | 220 | 5 | F | 96 |
| 209 | 4 | F | A, V | st | p | g | 115 | 221 | 3 | M | 81 |
| 210 | 6 | F | V | n (S) | p | b, g | 94 | 222 | 6 | M | 105 |
| 212 | 5 | M | E, V | st + n (S) | p | — | 98 | 226 | 4 | F | 109 |
| 213 | 4 | M | E | st + n (S) | p | — | 115 | 227 | 6 | M | 87 |
| 216 | 5 | F | A, V | st + n (S) | u | ca, g, h | 92 | 232 | 4 | M | 100 |
| 217 | 6 | F | A, E, V | st | c | b, g, h | 111 | 233 | 5 | F | 112 |
| 223 | 5 | M | V | st + n (LTRA) | c | ca, f, g, h | 99 | 234 | 5 | F | 119 |
| 224 | 4 | F | V | st | c | — | 135 | 235 | 4 | M | 116 |
| 225 | 4 | M | V | st + n (S) | c | / | 97 | 236 | 5 | M | 111 |
| 228 | 5 | M | V | — | c | ca, g, h | 84 | 237 | 4 | M | 109 |
| 229 | 4 | M | V | n (S) | c | al, b, ca, g, h | 86 | 240 | 4 | F | 92 |
| 230 | 5 | M | V | — | c | al, am, b, ca, g, h | 107 | 241 | 5 | M | 123 |
| 231 | 4 | M | V | st + n (S) | c | b | 71 | 244 | 5 | F | 107 |
| 238 | 4 | M | V | st + n (S) | c | am, ca, g, h | 86 | 245 | 4 | M | 121 |
| 239 | 5 | F | E | n (ah) | c | / | 98 | 246 | M | 109 | |
| 242 | 5 | M | A, E, V | st + n (ah) | c | / | 81 | ||||
| 243 | 5 | F | V | st + n (S) | u | al, am, h | 69 | ||||
| Average | 4.9 ± 0.1 | 101.9 ± 4.0 | 4.7 ±0.18 | 105.7 ± 3.0 | |||||||
A, Allergen induced; ah, antihistamine; al, Alternaria species; am, ambrosia; b, birch; ca, cat; c, controlled; E, exercise-induced; F, female; f, Dermatophagoides farinae; g, grass pollen mix; h, house dust mite; LTRA, leukotriene antagonist; M, male; n, nonsteroid treatment; p, partially controlled; st+S, steroid treatment; U, unresolved; u, uncontrolled; V, virus-induced asthma.
Viral colonization in nasal pharyngeal fluid (NPF) at baseline (B0)
| Asthmatic patients | Rhinovirus | Control subjects | Rhinovirus |
|---|---|---|---|
| 201 | ++ | 208 | − |
| 202 | ++ | 211 | ++ |
| 203 | − | 214 | ++ |
| 204 | − | 215 | − |
| 205 | − | 218 | +++ |
| 206 | ++ | 219 | + |
| 207 | − | 220 | − |
| 209 | − | 221 | ++ |
| 210 | CoVNL63++ | 222 | − |
| 212 | Flu A++ | 226 | + |
| 213 | ++ | 227 | + |
| 216 | − | 232 | +++ |
| 217 | − | 233 | +, MPV+ |
| 223 | +++ | 234 | ++, AdV++ |
| 224 | ++, PIV4+ | 235 | ++ |
| 225 | ++, PIV4+ | 236 | − |
| 228 | − | 240 | +, PIV4+, HBoV+, FluA++ |
| 229 | +++ | 241 | ++ |
| 230 | + | 245 | − |
| 231 | HBoV++, CoVNL63+++ | 246 | + |
| 238 | +++ | ||
| 239 | + | ||
| 242 | +, HBoV+, RSVB++, HEV++, PIRV++, PIV4, AdV+ | ||
| 243 | +++ |
In some cases other respiratory viruses were detected as follows: AdV, Adenovirus; CoV (NL63), human coronavirus (NL63); FluA/B, influenza virus A/B; HBoV, human bocavirus; HEV, enterovirus; MPV, human metapneumovirus; OC43/HK1, human coronavirus (OC43/HK1); PIV2/4, parainfluenza virus 1-4; RSVA/B, respiratory syncytial virus A/B; RV, rhinovirus.
+, Low copy number of rhinovirus; ++, intermediate copy number of rhinovirus; +++, high copy number of viral genomes detected in the sample; −, negative, no virus detected.
Fig 1PBMCs from asthmatic children exposed to RV1b in vitro upregulated IDO, PDL1, and LAP3. A, Experimental design for RNA arrays of PBMCs cultured in the presence or absence of rhinovirus (RV). B-E, Heat maps for asthmatic (Fig 1, B and C) and control (Fig 1, D and E) children and a differential expression analysis of the regulated genes are shown (asthma: n = 7, control: n = 5).
Viral detection in nasal pharyngeal fluid (NPF) at the end point visit and 24 months (F4) after baseline (B0) in asthmatic and control children of the Erlangen cohort analyzed in gene arrays
| Control subjects (n = 6) | F4 | Asthmatic patients (n = 8) | F4 |
|---|---|---|---|
| 215 | RV+, AdV+++ | 202 | RV++ |
| 220 | − | 204 | RV |
| 221 | − | 205 | RV+++ |
| 222 | − | 210 | HEV |
| 226 | RV++ | 212 | RV+ |
| 227 | − | 216 | RV++ |
| 217 | RV++ | ||
| 223 | No sample |
+, Low copy number; ++, intermediate copy number; +++, high copy number of viral genomes detected in the sample; −, negative, no virus detected; AdV, adenovirus; HEV, human enterovirus; RV, rhinovirus.
Medications taken by the asthmatic children analyzed in gene arrays
| Asthma F4 | Rhinovirus | Medication |
|---|---|---|
| 202 | − and + | Steroid |
| 204 | − and + | Steroid + β2-agonists |
| 205 | − and + | Steroid + β2-agonist |
| 212 | − and + | Steroid + β2-agonists |
| 217 | − and + | Steroids |
| 216 | Only − | Steroids + β2-agonists |
| 223 | Only + | Steroid + LTRA |
LTRA, Leukotriene antagonist.
Meaning of the genes shown in the heat maps
| Expressed by activated T cells. Other T cells can receive an inhibitory signal from CTLA4 to prevent an overreaction of the immune system. | |
| Tryptophan-converting enzyme that promotes T cell–mediated tolerance and antimicrobial effects. Several diseases are associated with increased expression. | |
| Encodes an immune inhibitory receptor ligand. Can inhibit T-cell activation and cytokine production, which is essential for preventing autoimmunity (PD-L1). | |
| Encodes a protein that is a member of the IL-1 cytokine family. This cytokine is an important mediator of the inflammatory response and is involved in cell proliferation, differentiation, and apoptosis. | |
| Encodes an interferon-induced antiviral protein that inhibits entry of viruses to the host cell cytoplasm, permitting endocytosis but preventing subsequent viral fusion and release of viral contents into the cytosol. | |
| Encodes a protein called a low-density lipoprotein receptor. This receptor binds to low-density lipoproteins, which are the primary carriers of cholesterol in the blood. Also, some rhinoviruses bind to the LDL receptor. | |
| Encodes a gene that is a member of the Toll-like receptor family. Takes part in pathogen recognition and activation of innate immunity. | |
| MAD2L2 is a component of the mitotic spindle assembly checkpoint that prevents the onset of anaphase until all chromosomes are properly aligned at the metaphase plate. | |
| Encodes a protein belonging to the TNF receptor superfamily. It contains a death domain and has been shown to play a central role in the physiologic regulation of programmed cell death. | |
| Encodes a protein containing a chromodomain and a histone acetyltransferase catalytic domain. Chromodomain proteins are components of heterochromatin-like complexes and can act as gene repressors. | |
| Transcriptional repressor that can repress transcription by recruiting histone deacetylases to TGF-β–responsive genes. | |
| Encodes a member of the pancreatic type of secretory ribonucleases, which cleave internal phosphodiester RNA bonds on the 3′ side of pyrimidine bases. | |
| An oncogene that can regulate the stability and accumulation of critical G1 cell-cycle factors, including Emi1 and cyclin A. | |
| Belongs to the family of G proteins and is involved in cellular signaling mechanisms, cytoskeletal reorganization, and subsequent morphologic changes in various cell types. | |
| Induced by IFN-α and is associated with drug resistance and tumor immune escape. | |
| A proinflammatory cytokine that can induce cells of the immune system to secrete inflammatory cytokines, such as TNF-α and IL-6. | |
| Belongs to the RNase A superfamily. Its expression is induced in neutrophils and monocytes on bacterial infection, suggesting a role in host defense. |
Fig E1MRNA expression of IDO in PBMCs. A,IDO mRNA expression in PBMCs from asthmatic (A) and nonasthmatic (CN) children with (+RV) or without (−RV) in vitro rhinovirus treatment. B, PBMCs from healthy volunteers were in vitro incubated with different concentrations of dexamethasone (Dex), 10−6 mol/L and 10−8 mol/L, and IDO expression was determined by using qPCR. *P ≤ .05 and **P ≤ .01.
Fig 2Rhinovirus (RV) inhibits TGF-β release from PBMCs isolated from healthy and asthmatic children. A, TGF-β1 release from PBMCs of asthmatic and nonasthmatic children with or without in vitro rhinovirus infection analyzed by means of ELISA (n = 26-32 children per group, B0+F4). B-E, Relative mRNA expression of TGFB (Fig 2, B; n = 12-20), TGFBRII (Fig 2, C; n =3-6), FOXP3 (Fig 2, D; n = 19-31), and RORC (Fig 2, E; n = 19-31) in asthmatic and nonasthmatic children with or without in vitro rhinovirus infection (B0+F4) analyzed by means of real-time PCR. F-I, Correlation of RORC and FOXP3 mRNA expression in untreated and in vitro–infected PBMCs from asthmatic and nonasthmatic children. J and K, Relative TBX21 (Fig 2, J; n = 10-22) or IL6 (Fig 2, K; n = 10-27) mRNA expression from PBMCs in asthmatic and healthy children with or without in vitro rhinovirus treatment analyzed by using real-time PCR. The Student t test was used to calculate statistical significance. *P ≤ .05, **P ≤ .01, and ***P ≤ .001. Results are expressed as means ± SEMs.
Fig E2Rhinovirus induces TC1 cells in a murine model of asthma. A, Experimental design. i.n., Intranasal; i.p., intraperitoneal. B, CD8+IFN-γ+ cells were analyzed in total lung cells by using flow cytometry. A dot plot is shown for each group (n = 4-5 mice per group). *P ≤ .05, **P ≤ .01, and ***P ≤ .001.
Fig E3TGF-β treatment of rhinovirus-infected cells reduces T-bet expression in CD4+ T cells in a murine model of asthma. A, Experimental design. i.n., Intranasal; i.p., intraperitoneal. B,Ido mRNA expression was detected in total lung cells from naive mice cultured with TGF-β after in vitro treatment with rhinovirus or untreated (n = 4). C, CD4+T-bet+ cells were analyzed in total lung cells from naive or OVA-treated mice by using flow cytometry. Exemplary dot plots are depicted for each group analyzed (n = 4-5 mice per group). *P ≤ .05 and **P ≤ .01.