Literature DB >> 28134931

G-quadruplex structures within the 3' UTR of LINE-1 elements stimulate retrotransposition.

Aleksandr B Sahakyan1,2, Pierre Murat1,2, Clemens Mayer1,2, Shankar Balasubramanian1,2,3.   

Abstract

Long interspersed nuclear elements (LINEs) are ubiquitous transposable elements in higher eukaryotes that have a significant role in shaping genomes, owing to their abundance. Here we report that guanine-rich sequences in the 3' untranslated regions (UTRs) of hominoid-specific LINE-1 elements are coupled with retrotransposon speciation and contribute to retrotransposition through the formation of G-quadruplex (G4) structures. We demonstrate that stabilization of the G4 motif of a human-specific LINE-1 element by small-molecule ligands stimulates retrotransposition.

Entities:  

Mesh:

Substances:

Year:  2017        PMID: 28134931     DOI: 10.1038/nsmb.3367

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  26 in total

1.  Molecular architecture of G-quadruplex structures generated on duplex Rif1-binding sequences.

Authors:  Hisao Masai; Naoko Kakusho; Rino Fukatsu; Yue Ma; Keisuke Iida; Yutaka Kanoh; Kazuo Nagasawa
Journal:  J Biol Chem       Date:  2018-09-14       Impact factor: 5.157

2.  Cancer mutational burden is shaped by G4 DNA, replication stress and mitochondrial dysfunction.

Authors:  Albino Bacolla; Zu Ye; Zamal Ahmed; John A Tainer
Journal:  Prog Biophys Mol Biol       Date:  2019-03-14       Impact factor: 3.667

3.  Thermodynamically stable and genetically unstable G-quadruplexes are depleted in genomes across species.

Authors:  Emilia Puig Lombardi; Allyson Holmes; Daniela Verga; Marie-Paule Teulade-Fichou; Alain Nicolas; Arturo Londoño-Vallejo
Journal:  Nucleic Acids Res       Date:  2019-07-09       Impact factor: 16.971

4.  Human DNA Repair Genes Possess Potential G-Quadruplex Sequences in Their Promoters and 5'-Untranslated Regions.

Authors:  Aaron M Fleming; Judy Zhu; Yun Ding; Joshua A Visser; Julia Zhu; Cynthia J Burrows
Journal:  Biochemistry       Date:  2018-01-24       Impact factor: 3.162

5.  Human L1 Transposition Dynamics Unraveled with Functional Data Analysis.

Authors:  Di Chen; Marzia A Cremona; Zongtai Qi; Robi D Mitra; Francesca Chiaromonte; Kateryna D Makova
Journal:  Mol Biol Evol       Date:  2020-12-16       Impact factor: 16.240

6.  LINE- and Alu-containing genomic instability hotspot at 16q24.1 associated with recurrent and nonrecurrent CNV deletions causative for ACDMPV.

Authors:  Przemyslaw Szafranski; Ewelina Kośmider; Qian Liu; Justyna A Karolak; Lauren Currie; Sandhya Parkash; Stephen G Kahler; Elizabeth Roeder; Rebecca O Littlejohn; Thomas S DeNapoli; Felix R Shardonofsky; Cody Henderson; George Powers; Virginie Poisson; Denis Bérubé; Luc Oligny; Jacques L Michaud; Sandra Janssens; Kris De Coen; Jo Van Dorpe; Annelies Dheedene; Matthew T Harting; Matthew D Weaver; Amir M Khan; Nina Tatevian; Jennifer Wambach; Kathleen A Gibbs; Edwina Popek; Anna Gambin; Paweł Stankiewicz
Journal:  Hum Mutat       Date:  2018-08-22       Impact factor: 4.878

Review 7.  G-quadruplex virtual drug screening: A review.

Authors:  Robert C Monsen; John O Trent
Journal:  Biochimie       Date:  2018-06-30       Impact factor: 4.079

Review 8.  The regulation and functions of DNA and RNA G-quadruplexes.

Authors:  Dhaval Varshney; Jochen Spiegel; Katherine Zyner; David Tannahill; Shankar Balasubramanian
Journal:  Nat Rev Mol Cell Biol       Date:  2020-04-20       Impact factor: 94.444

9.  Non-B DNA: a major contributor to small- and large-scale variation in nucleotide substitution frequencies across the genome.

Authors:  Wilfried M Guiblet; Marzia A Cremona; Robert S Harris; Di Chen; Kristin A Eckert; Francesca Chiaromonte; Yi-Fei Huang; Kateryna D Makova
Journal:  Nucleic Acids Res       Date:  2021-02-22       Impact factor: 16.971

10.  Selection and thermostability suggest G-quadruplexes are novel functional elements of the human genome.

Authors:  Wilfried M Guiblet; Michael DeGiorgio; Xiaoheng Cheng; Francesca Chiaromonte; Kristin A Eckert; Yi-Fei Huang; Kateryna D Makova
Journal:  Genome Res       Date:  2021-06-29       Impact factor: 9.043

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.