Literature DB >> 28132488

Structural insights into cell cycle control by essential GTPase Era.

Xinhua Ji1.   

Abstract

Era (Escherichia coli Ras-like protein), essential for bacterial cell viability, is composed of an N-terminal GTPase domain and a C-terminal KH domain. In bacteria, it is required for the processing of 16S ribosomal RNA (rRNA) and maturation of 30S (small) ribosomal subunit. Era recognizes 10 nucleotides (1530GAUCACCUCC1539) near the 3' end of 16S rRNA and interacts with helix 45 (h45, nucleotides 1506-1529). GTP binding enables Era to bind RNA, RNA binding stimulates Era's GTP-hydrolyzing activity, and GTP hydrolysis releases Era from matured 30S ribosomal subunit. As such, Era controls cell growth rate via regulating the maturation of the 30S ribosomal subunit. Ribosomes manufacture proteins in all living organisms. The GAUCA sequence and h45 are highly conserved in all three kingdoms of life. Homologues of Era are present in eukaryotic cells. Hence, the mechanism of bacterial Era action also sheds light on the cell cycle control of eukaryotes.

Entities:  

Keywords:  16S rRNA; 30S ribosomal subunit; cell cycle control; ribosome biogenesis

Mesh:

Substances:

Year:  2016        PMID: 28132488      PMCID: PMC6622462     

Source DB:  PubMed          Journal:  Postepy Biochem        ISSN: 0032-5422


  49 in total

1.  Crystal structure of ERA: a GTPase-dependent cell cycle regulator containing an RNA binding motif.

Authors:  X Chen; D L Court; X Ji
Journal:  Proc Natl Acad Sci U S A       Date:  1999-07-20       Impact factor: 11.205

2.  RNase G (CafA protein) and RNase E are both required for the 5' maturation of 16S ribosomal RNA.

Authors:  Z Li; S Pandit; M P Deutscher
Journal:  EMBO J       Date:  1999-05-17       Impact factor: 11.598

3.  Era GTPase of Escherichia coli: binding to 16S rRNA and modulation of GTPase activity by RNA and carbohydrates.

Authors:  Timothy I Meier; Robert B Peery; Kelly A McAllister; Genshi Zhao
Journal:  Microbiology       Date:  2000-05       Impact factor: 2.777

4.  Protein S1 counteracts the inhibitory effect of the extended Shine-Dalgarno sequence on translation.

Authors:  Anastassia V Komarova; Ludmila S Tchufistova; Elena V Supina; Irina V Boni
Journal:  RNA       Date:  2002-09       Impact factor: 4.942

5.  Structural basis for recognition of the intron branch site RNA by splicing factor 1.

Authors:  Z Liu; I Luyten; M J Bottomley; A C Messias; S Houngninou-Molango; R Sprangers; K Zanier; A Krämer; M Sattler
Journal:  Science       Date:  2001-11-02       Impact factor: 47.728

6.  Sequence-specific RNA binding by a Nova KH domain: implications for paraneoplastic disease and the fragile X syndrome.

Authors:  H A Lewis; K Musunuru; K B Jensen; C Edo; H Chen; R B Darnell; S K Burley
Journal:  Cell       Date:  2000-02-04       Impact factor: 41.582

7.  Analysis of guanine nucleotide binding and exchange kinetics of the Escherichia coli GTPase Era.

Authors:  S M Sullivan; R Mishra; R R Neubig; J R Maddock
Journal:  J Bacteriol       Date:  2000-06       Impact factor: 3.490

8.  Era, an essential Escherichia coli small G-protein, binds to the 30S ribosomal subunit.

Authors:  A Sayed; S i Matsuyama; M Inouye
Journal:  Biochem Biophys Res Commun       Date:  1999-10-14       Impact factor: 3.575

9.  Isolation and preliminary characterization of the human and mouse homologues of the bacterial cell cycle gene era.

Authors:  R A Britton; S M Chen; D Wallis; T Koeuth; B S Powell; L G Shaffer; D Largaespada; N A Jenkins; N G Copeland; D L Court; J R Lupski
Journal:  Genomics       Date:  2000-07-01       Impact factor: 5.736

10.  16S rRNA is bound to era of Streptococcus pneumoniae.

Authors:  T I Meier; R B Peery; S R Jaskunas; G Zhao
Journal:  J Bacteriol       Date:  1999-09       Impact factor: 3.490

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  6 in total

1.  Contribution of YthA, a PspC Family Transcriptional Regulator of Lactococcus lactis F44 Acid Tolerance and Nisin Yield: a Transcriptomic Approach.

Authors:  Hao Wu; Jingui Liu; Sen Miao; Yue Zhao; Hongji Zhu; Mingqiang Qiao; Per Erik Joakim Saris; Jianjun Qiao
Journal:  Appl Environ Microbiol       Date:  2018-03-01       Impact factor: 4.792

2.  WSL6 encoding an Era-type GTP-binding protein is essential for chloroplast development in rice.

Authors:  Yinglun Sun; Yunlu Tian; Shuhan Cheng; Yunlong Wang; Yuanyuan Hao; Jianping Zhu; Xiaopin Zhu; Yuanyan Zhang; Mingzhou Yu; Jie Lei; Xiuhao Bao; Hongming Wu; Yihua Wang; Jianmin Wan
Journal:  Plant Mol Biol       Date:  2019-05-30       Impact factor: 4.076

3.  Reformulation of an extant ATPase active site to mimic ancestral GTPase activity reveals a nucleotide base requirement for function.

Authors:  Taylor B Updegrove; Jailynn Harke; Vivek Anantharaman; Jin Yang; Nikhil Gopalan; Di Wu; Grzegorz Piszczek; David M Stevenson; Daniel Amador-Noguez; Jue D Wang; L Aravind; Kumaran S Ramamurthi
Journal:  Elife       Date:  2021-03-11       Impact factor: 8.140

4.  Role of Era in assembly and homeostasis of the ribosomal small subunit.

Authors:  Aida Razi; Joseph H Davis; Yumeng Hao; Dushyant Jahagirdar; Brett Thurlow; Kaustuv Basu; Nikhil Jain; Josue Gomez-Blanco; Robert A Britton; Javier Vargas; Alba Guarné; Sarah A Woodson; James R Williamson; Joaquin Ortega
Journal:  Nucleic Acids Res       Date:  2019-09-05       Impact factor: 16.971

5.  Construction and Use of Transposon MycoTetOP 2 for Isolation of Conditional Mycobacteria Mutants.

Authors:  Sarah D Riggs-Shute; Joseph O Falkinham; Zhaomin Yang
Journal:  Front Microbiol       Date:  2020-01-21       Impact factor: 5.640

Review 6.  The Impact of the Stringent Response on TRAFAC GTPases and Prokaryotic Ribosome Assembly.

Authors:  Daniel J Bennison; Sophie E Irving; Rebecca M Corrigan
Journal:  Cells       Date:  2019-10-24       Impact factor: 6.600

  6 in total

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