Literature DB >> 28128631

Suppression of Beneficial Mutations in Dynamic Microbial Populations.

Philip Bittihn1,2, Jeff Hasty1,2,3,4, Lev S Tsimring1,2.   

Abstract

Quantitative predictions for the spread of mutations in bacterial populations are essential to interpret evolution experiments and to improve the stability of synthetic gene circuits. We derive analytical expressions for the suppression factor for beneficial mutations in populations that undergo periodic dilutions, covering arbitrary population sizes, dilution factors, and growth advantages in a single stochastic model. We find that the suppression factor grows with the dilution factor and depends nontrivially on the growth advantage, resulting in the preferential elimination of mutations with certain growth advantages. We confirm our results by extensive numerical simulations.

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Year:  2017        PMID: 28128631      PMCID: PMC5552243          DOI: 10.1103/PhysRevLett.118.028102

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  18 in total

1.  The probability that beneficial mutations are lost in populations with periodic bottlenecks.

Authors:  L M Wahl; P J Gerrish
Journal:  Evolution       Date:  2001-12       Impact factor: 3.694

2.  On the probability of fixation of mutant genes in a population.

Authors:  M KIMURA
Journal:  Genetics       Date:  1962-06       Impact factor: 4.562

3.  Fast stochastic algorithm for simulating evolutionary population dynamics.

Authors:  William H Mather; Jeff Hasty; Lev S Tsimring
Journal:  Bioinformatics       Date:  2012-03-21       Impact factor: 6.937

4.  The effects of population bottlenecks on clonal interference, and the adaptation effective population size.

Authors:  Paolo R A Campos; L M Wahl
Journal:  Evolution       Date:  2009-01-02       Impact factor: 3.694

5.  Long-term dynamics of adaptation in asexual populations.

Authors:  Michael J Wiser; Noah Ribeck; Richard E Lenski
Journal:  Science       Date:  2013-11-14       Impact factor: 47.728

6.  The probability of fixation in populations of changing size.

Authors:  S P Otto; M C Whitlock
Journal:  Genetics       Date:  1997-06       Impact factor: 4.562

7.  Scaling laws governing stochastic growth and division of single bacterial cells.

Authors:  Srividya Iyer-Biswas; Charles S Wright; Jonathan T Henry; Klevin Lo; Stanislav Burov; Yihan Lin; Gavin E Crooks; Sean Crosson; Aaron R Dinner; Norbert F Scherer
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-27       Impact factor: 11.205

8.  Designing and engineering evolutionary robust genetic circuits.

Authors:  Sean C Sleight; Bryan A Bartley; Jane A Lieviant; Herbert M Sauro
Journal:  J Biol Eng       Date:  2010-11-01       Impact factor: 4.355

9.  Mutation Rate Inferred From Synonymous Substitutions in a Long-Term Evolution Experiment With Escherichia coli.

Authors:  Sébastien Wielgoss; Jeffrey E Barrick; Olivier Tenaillon; Stéphane Cruveiller; Béatrice Chane-Woon-Ming; Claudine Médigue; Richard E Lenski; Dominique Schneider
Journal:  G3 (Bethesda)       Date:  2011-08-01       Impact factor: 3.154

10.  A sensing array of radically coupled genetic 'biopixels'.

Authors:  Arthur Prindle; Phillip Samayoa; Ivan Razinkov; Tal Danino; Lev S Tsimring; Jeff Hasty
Journal:  Nature       Date:  2011-12-18       Impact factor: 49.962

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  4 in total

1.  Gene Conversion Facilitates Adaptive Evolution on Rugged Fitness Landscapes.

Authors:  Philip Bittihn; Lev S Tsimring
Journal:  Genetics       Date:  2017-10-04       Impact factor: 4.562

Review 2.  Rational engineering of synthetic microbial systems: from single cells to consortia.

Authors:  Philip Bittihn; M Omar Din; Lev S Tsimring; Jeff Hasty
Journal:  Curr Opin Microbiol       Date:  2018-03-22       Impact factor: 7.934

Review 3.  The emergence of adaptive laboratory evolution as an efficient tool for biological discovery and industrial biotechnology.

Authors:  Troy E Sandberg; Michael J Salazar; Liam L Weng; Bernhard O Palsson; Adam M Feist
Journal:  Metab Eng       Date:  2019-08-08       Impact factor: 9.783

4.  A stabilized microbial ecosystem of self-limiting bacteria using synthetic quorum-regulated lysis.

Authors:  Spencer R Scott; M Omar Din; Philip Bittihn; Liyang Xiong; Lev S Tsimring; Jeff Hasty
Journal:  Nat Microbiol       Date:  2017-06-12       Impact factor: 17.745

  4 in total

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