Literature DB >> 28127814

Transport capabilities of environmental Pseudomonads for sulfur compounds.

Sarah Zerbs1, Peter J Korajczyk1, Philippe H Noirot1, Frank R Collart1.   

Abstract

Sulfur is an essential element in plant rhizospheres and microbial activity plays a key role in increasing the biological availability of sulfur in soil environments. To better understand the mechanisms facilitating the exchange of sulfur-containing molecules in soil, we profiled the binding specificities of eight previously uncharacterized ABC transporter solute-binding proteins from plant-associated Pseudomonads. A high-throughput screening procedure indicated eighteen significant organosulfur binding ligands, with at least one high-quality screening hit for each protein target. Calorimetric and spectroscopic methods were used to validate the best ligand assignments and catalog the thermodynamic properties of the protein-ligand interactions. Two novel high-affinity ligand-binding activities were identified and quantified in this set of solute-binding proteins. Bacteria were cultured in minimal media with screening library components supplied as the sole sulfur sources, demonstrating that these organosulfur compounds can be metabolized and confirming the relevance of ligand assignments. These results expand the set of experimentally validated ligands amenable to transport by this ABC transporter family and demonstrate the complex range of protein-ligand interactions that can be accomplished by solute-binding proteins. Characterizing new nutrient import pathways provides insight into Pseudomonad metabolic capabilities which can be used to further interrogate bacterial survival and participation in soil and rhizosphere communities.
© 2017 The Protein Society.

Entities:  

Keywords:  ABC transporter; Pseudomonas fluorescens; Pseudomonas protegens; organosulfur compounds; rhizosphere

Mesh:

Substances:

Year:  2017        PMID: 28127814      PMCID: PMC5368066          DOI: 10.1002/pro.3124

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  60 in total

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Authors:  A Krogh; B Larsson; G von Heijne; E L Sonnhammer
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2.  Three different systems participate in L-cystine uptake in Bacillus subtilis.

Authors:  Pierre Burguière; Sandrine Auger; Marie-Françoise Hullo; Antoine Danchin; Isabelle Martin-Verstraete
Journal:  J Bacteriol       Date:  2004-08       Impact factor: 3.490

Review 3.  A structural classification of substrate-binding proteins.

Authors:  Ronnie P-A Berntsson; Sander H J Smits; Lutz Schmitt; Dirk-Jan Slotboom; Bert Poolman
Journal:  FEBS Lett       Date:  2010-04-20       Impact factor: 4.124

4.  Functional assignment of solute-binding proteins of ABC transporters using a fluorescence-based thermal shift assay.

Authors:  Sarah E Giuliani; Ashley M Frank; Frank R Collart
Journal:  Biochemistry       Date:  2008-12-30       Impact factor: 3.162

5.  Transport functions dominate the SAR11 metaproteome at low-nutrient extremes in the Sargasso Sea.

Authors:  Sarah M Sowell; Larry J Wilhelm; Angela D Norbeck; Mary S Lipton; Carrie D Nicora; Douglas F Barofsky; Craig A Carlson; Richard D Smith; Stephen J Giovanonni
Journal:  ISME J       Date:  2008-09-04       Impact factor: 10.302

6.  Structural and functional characterization of solute binding proteins for aromatic compounds derived from lignin: p-coumaric acid and related aromatic acids.

Authors:  Kemin Tan; Changsoo Chang; Marianne Cuff; Jerzy Osipiuk; Elizabeth Landorf; Jamey C Mack; Sarah Zerbs; Andrzej Joachimiak; Frank R Collart
Journal:  Proteins       Date:  2013-07-23

7.  Paralogous metabolism: S-alkyl-cysteine degradation in Bacillus subtilis.

Authors:  Che-Man Chan; Antoine Danchin; Philippe Marlière; Agnieszka Sekowska
Journal:  Environ Microbiol       Date:  2013-08-15       Impact factor: 5.491

8.  PredictProtein--an open resource for online prediction of protein structural and functional features.

Authors:  Guy Yachdav; Edda Kloppmann; Laszlo Kajan; Maximilian Hecht; Tatyana Goldberg; Tobias Hamp; Peter Hönigschmid; Andrea Schafferhans; Manfred Roos; Michael Bernhofer; Lothar Richter; Haim Ashkenazy; Marco Punta; Avner Schlessinger; Yana Bromberg; Reinhard Schneider; Gerrit Vriend; Chris Sander; Nir Ben-Tal; Burkhard Rost
Journal:  Nucleic Acids Res       Date:  2014-05-05       Impact factor: 16.971

9.  Diversity of Pseudomonas Genomes, Including Populus-Associated Isolates, as Revealed by Comparative Genome Analysis.

Authors:  Se-Ran Jun; Trudy M Wassenaar; Intawat Nookaew; Loren Hauser; Visanu Wanchai; Miriam Land; Collin M Timm; Tse-Yuan S Lu; Christopher W Schadt; Mitchel J Doktycz; Dale A Pelletier; David W Ussery
Journal:  Appl Environ Microbiol       Date:  2015-10-30       Impact factor: 4.792

10.  The Phyre2 web portal for protein modeling, prediction and analysis.

Authors:  Lawrence A Kelley; Stefans Mezulis; Christopher M Yates; Mark N Wass; Michael J E Sternberg
Journal:  Nat Protoc       Date:  2015-05-07       Impact factor: 13.491

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  1 in total

1.  Modeling the Pseudomonas Sulfur Regulome by Quantifying the Storage and Communication of Information.

Authors:  Peter E Larsen; Sarah Zerbs; Philip D Laible; Frank R Collart; Peter Korajczyk; Yang Dai; Philippe Noirot
Journal:  mSystems       Date:  2018-06-19       Impact factor: 6.496

  1 in total

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