Literature DB >> 28127680

Mass Spectral Library Quality Assurance by Inter-Library Comparison.

William E Wallace1, Weihua Ji2, Dmitrii V Tchekhovskoi2, Karen W Phinney3, Stephen E Stein2.   

Abstract

A method to discover and correct errors in mass spectral libraries is described. Comparing across a set of highly curated reference libraries compounds that have the same chemical structure quickly identifies entries that are outliers. In cases where three or more entries for the same compound are compared, the outlier as determined by visual inspection was almost always found to contain the error. These errors were either in the spectrum itself or in the chemical descriptors that accompanied it. The method is demonstrated on finding errors in compounds of forensic interest in the NIST/EPA/NIH Mass Spectral Library. The target list of compounds checked was the Scientific Working Group for the Analysis of Seized Drugs (SWGDRUG) mass spectral library. Some examples of errors found are described. A checklist of errors that curators should look for when performing inter-library comparisons is provided. Graphical Abstract ᅟ.

Entities:  

Keywords:  Cross-check; Curation; Data validation; Electron ionization mass spectrometry; Quality control; Standard reference data

Year:  2017        PMID: 28127680      PMCID: PMC5439505          DOI: 10.1007/s13361-016-1589-4

Source DB:  PubMed          Journal:  J Am Soc Mass Spectrom        ISSN: 1044-0305            Impact factor:   3.109


  12 in total

1.  On the risk of false positive identification using multiple ion monitoring in qualitative mass spectrometry: large-scale intercomparisons with a comprehensive mass spectral library.

Authors:  Stephen E Stein; David N Heller
Journal:  J Am Soc Mass Spectrom       Date:  2006-04-17       Impact factor: 3.109

2.  Distinguishing sympathomimetic amines from amphetamine and methamphetamine in urine by gas chromatography/mass spectrometry.

Authors:  E M Thurman; M J Pedersen; R L Stout; T Martin
Journal:  J Anal Toxicol       Date:  1992 Jan-Feb       Impact factor: 3.367

3.  Comparative evaluations of mass spectral databases.

Authors:  S E Stein; P Ausloos; S G Lias
Journal:  J Am Soc Mass Spectrom       Date:  1991-09       Impact factor: 3.109

4.  Optimization and testing of mass spectral library search algorithms for compound identification.

Authors:  S E Stein; D R Scott
Journal:  J Am Soc Mass Spectrom       Date:  1994-09       Impact factor: 3.109

5.  Estimating probabilities of correct identification from results of mass spectral library searches.

Authors:  S E Stein
Journal:  J Am Soc Mass Spectrom       Date:  1994-04       Impact factor: 3.109

6.  Mass spectral reference libraries: an ever-expanding resource for chemical identification.

Authors:  Stephen Stein
Journal:  Anal Chem       Date:  2012-07-13       Impact factor: 6.986

7.  Evaluation of the sensitivity of the 'Wiley registry of tandem mass spectral data, MSforID' with MS/MS data of the 'NIST/NIH/EPA mass spectral library'.

Authors:  Herbert Oberacher; Graeme Whitley; Bernd Berger
Journal:  J Mass Spectrom       Date:  2013-04       Impact factor: 1.982

8.  Quality control for building libraries from electrospray ionization tandem mass spectra.

Authors:  Xiaoyu Yang; Pedatsur Neta; Stephen E Stein
Journal:  Anal Chem       Date:  2014-06-13       Impact factor: 6.986

9.  The critical evaluation of a comprehensive mass spectral library.

Authors:  P Ausloos; C L Clifton; S G Lias; A I Mikaya; S E Stein; D V Tchekhovskoi; O D Sparkman; V Zaikin; D Zhu
Journal:  J Am Soc Mass Spectrom       Date:  1999-04       Impact factor: 3.262

10.  Numeric Databases for Chemical Analysis.

Authors:  Sharon G Lias
Journal:  J Res Natl Inst Stand Technol       Date:  1989 Jan-Feb
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  14 in total

1.  Mass spectral similarity mapping applied to fentanyl analogs.

Authors:  A S Moorthy; A J Kearsley; W G Mallard; W E Wallace
Journal:  Forensic Chem       Date:  2020

2.  Using Accurate Mass Gas Chromatography-Mass Spectrometry with the MINE Database for Epimetabolite Annotation.

Authors:  Zijuan Lai; Tobias Kind; Oliver Fiehn
Journal:  Anal Chem       Date:  2017-09-22       Impact factor: 6.986

Review 3.  Interpol review of controlled substances 2016-2019.

Authors:  Nicole S Jones; Jeffrey H Comparin
Journal:  Forensic Sci Int Synerg       Date:  2020-05-24

Review 4.  Diversity of Neuropeptide Cell-Cell Signaling Molecules Generated by Proteolytic Processing Revealed by Neuropeptidomics Mass Spectrometry.

Authors:  Vivian Hook; Christopher B Lietz; Sonia Podvin; Tomas Cajka; Oliver Fiehn
Journal:  J Am Soc Mass Spectrom       Date:  2018-04-17       Impact factor: 3.109

Review 5.  Identification of small molecules using accurate mass MS/MS search.

Authors:  Tobias Kind; Hiroshi Tsugawa; Tomas Cajka; Yan Ma; Zijuan Lai; Sajjan S Mehta; Gert Wohlgemuth; Dinesh Kumar Barupal; Megan R Showalter; Masanori Arita; Oliver Fiehn
Journal:  Mass Spectrom Rev       Date:  2017-04-24       Impact factor: 10.946

Review 6.  Selected Instrumental Techniques Applied in Food and Feed: Quality, Safety and Adulteration Analysis.

Authors:  Graciela Artavia; Carolina Cortés-Herrera; Fabio Granados-Chinchilla
Journal:  Foods       Date:  2021-05-13

7.  Combining Fragment-Ion and Neutral-Loss Matching during Mass Spectral Library Searching: A New General Purpose Algorithm Applicable to Illicit Drug Identification.

Authors:  Arun S Moorthy; William E Wallace; Anthony J Kearsley; Dmitrii V Tchekhovskoi; Stephen E Stein
Journal:  Anal Chem       Date:  2017-12-01       Impact factor: 6.986

Review 8.  Recognition of the polycistronic nature of human genes is critical to understanding the genotype-phenotype relationship.

Authors:  Marie A Brunet; Sébastien A Levesque; Darel J Hunting; Alan A Cohen; Xavier Roucou
Journal:  Genome Res       Date:  2018-04-06       Impact factor: 9.043

9.  Metrics for evaluating the stability and reproducibility of mass spectra.

Authors:  E S Zhvansky; S I Pekov; A A Sorokin; V A Shurkhay; V A Eliferov; A A Potapov; E N Nikolaev; I A Popov
Journal:  Sci Rep       Date:  2019-01-29       Impact factor: 4.379

Review 10.  Software Tools and Approaches for Compound Identification of LC-MS/MS Data in Metabolomics.

Authors:  Ivana Blaženović; Tobias Kind; Jian Ji; Oliver Fiehn
Journal:  Metabolites       Date:  2018-05-10
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